Influence of cationic porphyrins on melting parameters of calf thymus DNA
Proceedings of the Yerevan State University. Physical and mathematical sciences, no. 1 (2014), pp. 51-56.

Voir la notice de l'article provenant de la source Math-Net.Ru

The influence of water soluble cationic $3N$- and $4N$-pyridyl porphyrins with different peripheral substituents on melting parameters of Calf Thymus DNA has been studied. It was shown, that the presence of porphyrin changes the shape and parameters of DNA melting curve. The decrease of $\Delta T$ in the presence of $3N$-porphyrins is observed. Because of the intercalation binding mechanism occurs in $GC$-rich regions of DNA, which is the reason for the decrease melting interval. While even at the low relative concentration for $4N$-porphyrins already the external binding mechanism "turns on” and as a result the change in the melting parameters of DNA upon complexation with these porphyrins is not observed.
Keywords: calf Thymus DNA, porphyrin, melting curves, melting parameters.
@article{UZERU_2014_1_a9,
     author = {L. R. Aloyan and Y. B. Dalyan},
     title = {Influence of cationic porphyrins on melting parameters of calf thymus {DNA}},
     journal = {Proceedings of the Yerevan State University. Physical and mathematical sciences},
     pages = {51--56},
     publisher = {mathdoc},
     number = {1},
     year = {2014},
     language = {en},
     url = {http://geodesic.mathdoc.fr/item/UZERU_2014_1_a9/}
}
TY  - JOUR
AU  - L. R. Aloyan
AU  - Y. B. Dalyan
TI  - Influence of cationic porphyrins on melting parameters of calf thymus DNA
JO  - Proceedings of the Yerevan State University. Physical and mathematical sciences
PY  - 2014
SP  - 51
EP  - 56
IS  - 1
PB  - mathdoc
UR  - http://geodesic.mathdoc.fr/item/UZERU_2014_1_a9/
LA  - en
ID  - UZERU_2014_1_a9
ER  - 
%0 Journal Article
%A L. R. Aloyan
%A Y. B. Dalyan
%T Influence of cationic porphyrins on melting parameters of calf thymus DNA
%J Proceedings of the Yerevan State University. Physical and mathematical sciences
%D 2014
%P 51-56
%N 1
%I mathdoc
%U http://geodesic.mathdoc.fr/item/UZERU_2014_1_a9/
%G en
%F UZERU_2014_1_a9
L. R. Aloyan; Y. B. Dalyan. Influence of cationic porphyrins on melting parameters of calf thymus DNA. Proceedings of the Yerevan State University. Physical and mathematical sciences, no. 1 (2014), pp. 51-56. http://geodesic.mathdoc.fr/item/UZERU_2014_1_a9/

[1] R.J. Fiel, J.C. Howard, E.H. Mark, N. Datta-Cupta, “Interaction of DNA with a Porphyrin Ligand: Evidence for Intercalation”, Nucl. Acids Res., 6:9 (1979), 3093–3118 | DOI

[2] T.J. Dougherty, C.J. Gomer, B.W. Henderson, G. Jori, D. Kessel, M. Korbelik, J. Moan, Q. Peng, “Photodynamic Therapy”, J. Natl. Cancer Inst., 90 (1998), 889–905 | DOI

[3] L.G. Marzilli, “Medical Aspects of DNA-Porphyrin Interactions”, New J. Chem., 14 (1990), 409–420

[4] M. Bennett, A. Krah, F. Wien, E. Garman, R. Mckenna, M. Sanderson, “A DNA–Porphyrin Minor-Groove Complex at Atomic Resolution: The Structural Consequences of Porphyrin Ruffling”, PNAS, 97:17 (2000), 9476–9481 | DOI

[5] A.A. Ghazaryan, Ye.B. Dalyan, S.G. Haroutiunian, A. Tikhomirova, N. Taulier, J.W. Wells, T.V. Chalikian, “Thermodynamics of Interactions of Water-Soluble Porphyrins with RNA Duplexes”, J. Am. Chem. Soc., 128 (2006), 1914–1921 | DOI

[6] R.F. Pasternack, P. Garrity, B. Ehrlich, C.B. Davis, E.J. Gibbs, G. Orloff, A. Giartosio, C. Turano, “The Influence of Ionic Strength on the Binding of a Water Soluble Porphyrin to Nucleic Acids”, Nucl. Acids Res., 14:14 (1986), 5919–5931 | DOI

[7] L.R. Aloyan, G.V. Ananyan, V.I. Vardanyan, Ye.B. Dalyan, “The Influence of Peripheral Substituents on Interaction of Porphyrins with DNA”, Uchenie Zapiski EGU, 2006, no. 3, 40–45 (in Russian)

[8] P. Kubat, K. Lang, V. Kral, P. Anzenbacher Jr., “Preprogramming of Porphyrin-Nucleic Acid Assemblies via Variation of the Alkyl/Aryl Substituents of Phosphonium Tetratolylporphyrins”, J. Phys. Chem. B, 106 (2002), 6784–6792. | DOI | MR

[9] Ye.B. Dalyan, S.G. Haroutiunian, G.V. Ananyan, V.I. Vardanyan, D.Y. Lando, V.N. Madakyan, R.K. Kazaryan, L. Messory, P.-L. Orioli, A.S. Benight, “Interactions of Meso-tetra-(4-N-oxyethylpyridyl)porphyrin, its 3-N Analog and Their Metallocomplexes with Duplex DNA”, JBSD, 18:5 (2001), 677–687

[10] D.L. Banville, L.G. Marzilli, J.A. Strickland, W.D. Wilson, “Comparison of the Effects of Cationic Porphyrins on DNA Properties: Influence of GC Content of Native and Synthetic Polymers”, Biopolymers, 25 (1986), 1837–1858 | DOI

[11] K. Ford, K.R. Fox, S. Neidle, M.J. Waring, “DNA Sequence Preferences for an Intercalating Porphyrin Compound Revealed by Footprinting”, Nucl. Acids Res., 15 (1987), 2221–2234 | DOI

[12] A.A. Ghazaryan, Ye.B. Dalyan, S.G. Haroutiunian, A. Tikhomirova, N. Taulier, J.W. Wells, T.V. Chalikian, “Thermodynamics of Interactions of Water-Soluble Porphyrins with RNA Duplexes”, J. Am. Chem. Soc., 128 (2006), 1914–1921 | DOI

[13] L.R. Aloyan, “Peculiarity of Zn-containing Mezo-tetra-(3N-phyridyl)porphyrins with DNA”, Vestnik IAELPS, 10:6 (2005), 245–249 (in Russian)

[14] V.N. Madakyan, R.K. Kazaryan, M.A. Khachatryan, A.S. Stepanyan, T.S. Kurtikyan, M.B. Ordyan, “New Derivatives of Meso-(tetra-4 pyridyl)porphine and Their Reactions”, Chem. Heterocycl. Compd., 22:2 (1986), 167–171 | DOI

[15] A.A. Ahrem, D.Yu. Lando, “Effect of Selective Binding Ligands on Helix-Coil Transition of DNA”, Mol. Biol. (USSR), 15:5 (1981), 1083–1091 (in Russian)