Voir la notice de l'article provenant de la source Math-Net.Ru
@article{SJIM_2020_23_1_a9, author = {O. I. Krivorotko and D. V. Andornaya and S. I. Kabanikhin}, title = {Sensitivity analysis and practical identifiability of some mathematical models in biology}, journal = {Sibirskij \v{z}urnal industrialʹnoj matematiki}, pages = {107--125}, publisher = {mathdoc}, volume = {23}, number = {1}, year = {2020}, language = {ru}, url = {http://geodesic.mathdoc.fr/item/SJIM_2020_23_1_a9/} }
TY - JOUR AU - O. I. Krivorotko AU - D. V. Andornaya AU - S. I. Kabanikhin TI - Sensitivity analysis and practical identifiability of some mathematical models in biology JO - Sibirskij žurnal industrialʹnoj matematiki PY - 2020 SP - 107 EP - 125 VL - 23 IS - 1 PB - mathdoc UR - http://geodesic.mathdoc.fr/item/SJIM_2020_23_1_a9/ LA - ru ID - SJIM_2020_23_1_a9 ER -
%0 Journal Article %A O. I. Krivorotko %A D. V. Andornaya %A S. I. Kabanikhin %T Sensitivity analysis and practical identifiability of some mathematical models in biology %J Sibirskij žurnal industrialʹnoj matematiki %D 2020 %P 107-125 %V 23 %N 1 %I mathdoc %U http://geodesic.mathdoc.fr/item/SJIM_2020_23_1_a9/ %G ru %F SJIM_2020_23_1_a9
O. I. Krivorotko; D. V. Andornaya; S. I. Kabanikhin. Sensitivity analysis and practical identifiability of some mathematical models in biology. Sibirskij žurnal industrialʹnoj matematiki, Tome 23 (2020) no. 1, pp. 107-125. http://geodesic.mathdoc.fr/item/SJIM_2020_23_1_a9/
[1] B. M. Adams, H. T. Banks, M. Davidian, H. D. Kwon, H. T. Tran, S. N. Wynne, E. S. Rosenberg, “HIV dynamics: Modeling, data analysis, and optimal treatment protocols”, J. Comput. Appl. Math., 184 (2005), 10–49 | DOI | MR | Zbl
[2] L. W. Roeger, Z. Feng, C. Castillo-Chavez, “Modelling TB and HIV Co-infections”, Math. Biosci. Eng., 6:4 (2009), 815–837 | DOI | MR | Zbl
[3] E. Carson, C. Cobelli, Modelling Methodology for Physiology and Medicine, Acad. Press, N.Y., 2001
[4] C. Cobelli, E. Carson, Introduction to Modelling in Physiology and Medicine, Acad. Press, N.Y., 2008
[5] S. Audology, L. Angio, “On the identifiability of linear compartmental system: a revisited transfer function approach based on topological properties”, Math. Biosci., 10:5 (1983), 10–17 | MR
[6] S. I. Kabanikhin, “Definitions and examples of inverse and ill-posed problems”, J. Inverse Ill-Posed Probl., 16 (2008), 317–357 | MR | Zbl
[7] H. Miao, X. Xia, A. S. Perelson, H. We, “On identifiability of nonlinear ODE models and applications in viral dynamics”, SIAM Rec. Soc. Ind. Appl. Math., 53:1 (2011), 3–39 | MR | Zbl
[8] K. Glover, J. Willems, “Parametrization of linear dynamical systems: canonical forms and identifiability”, IEEE Trans. Automat. Control, 19 (1974), 640–646 | DOI | MR | Zbl
[9] R. Bellman, K. Astrom, “On Structural identifiability”, Math. Biosci., 30:4 (1970), 65–74
[10] M. Grewal, K. Glover, “Identifiability of linear and nonlinear dynamical systems”, IEEE Trans. Automat. Control, 21:6 (1976), 833–837 | DOI | MR | Zbl
[11] S. Vajda, “Identifiability of first order reaction systems”, React. Kinet. Catal. Lett., 11:1 (1989), 39–43 | DOI
[12] C. Cobeli, J. DiStefano, “Parameter and structural identifiability concepts and ambiguities: a critical review and analysis”, Am. J. Physiol. Reg. I, 3:3 (1980), 369–380
[13] T. Tunali, T. Tarn, “New results for identifiability of nonlinear systems”, IEEE Trans. Automat. Control, 15 (1987), 45–51 | MR
[14] V. F. Shcherbak, “Conditions for identifiability of dynamical systems”, Mat. Fiz., 34 (1983), 105–108
[15] A. A. Levakov, “Identifiability of nonlinear systems”, Differentsial'nye uravneniya, 19:6 (1983), 1074–1078 (in Russian) | MR
[16] V. V. Karelin, Methods for Identification and Optimization of Control Systems, Methodological Directions, Publ. St. Petersburg Univ., St. Petersburg, 1990 (in Russian)
[17] A. A. Lomov, “Simultaneous identifiability of coefficients of linear difference equations of the object and additive disturbances”, Vestnik Novosib. Gos. Univ. Ser. Mat. Mekh. Inform., 15:4 (2015), 46–57 (in Russian)
[18] T. V. Avdeenko, S. A. Kargin, “Analysis of identifiability of linear dynamical models with application of separators of a parametric space”, Sibir. Zh. Indust. Mat., 9:3 (2006), 3–16 | Zbl
[19] M. Saccomani, C. Cobeli, “Qualitative experiment design in physiological system identification”, IEEE Control System, 3:12 (1992), 18–23
[20] R. Brown, “Compartmental system analysis: state of the art”, IEEE Trans. Biomed. Eng., 14:3 (1980), 31–41
[21] R. Brown, “Identifiability: role in design of pharmacokinetic experiments”, IEEE Trans. Biomed. Eng., 14:3 (1982), 31–41
[22] M. Saccomani, S. Audoly, L. Angio, “An effective automatic procedure for testing parameter identifiability of HIV/AIDS models”, Bull. Math. Biol., 73 (1978), 1734–1753 | DOI | MR
[23] G. Bellu, M. Saccomani, S. Audoly, L. D'Angio, “Daisy: A new software tool to test global identifiablity of biological and physiological system”, Comp. Meth. Prog. Biomed. Math. Biosci., 88:1 (2007), 52–61 | DOI
[24] N. Meshkat, C. E. Kuo, J. J. DiStefano, “Finding and using identifiable parameter combinations in nonlinear dynamic systems biology models and COMBOS: A novel web implementation”, Plos One, 9:10 (2014), e110261 | DOI
[25] N. Meshkat, C. Anderson, J. J. DiStefano, “Alternative to Ritt's pseudodivision for finding the input-output equations of multi-output models”, Math. Biosci., 239:1 (2012), 117–123 | DOI | MR | Zbl
[26] A. Raue, J. Karlsson, M. P. Saccomani, M. Jirstrand, J. Timme, “Comparison of approaches for parameter identifiability analysis of biological systems”, Bioinformatics, 30:10 (2014), 1440–1448 | DOI
[27] S. I. Kabanikhin, D. A. Voronov, A. A. Grodz, O. I. Krivorotko, “Identifiability of mathematical models of medicine biology”, Vavilov Zh. Genet. i Selek., 19:6 (2015), 738–744 (in Russian)
[28] A. F. Villaverde, A. Barreiroc, “Identifiability of large nonlinear biochemical networks”, MATCH Commun. Math. Comput. Chem., 76 (2016), 259–296 | MR
[29] A. Saltelli, K. Chan, M. Scott, Sensitivity Analysis, Wiley Series in Probability and Statistics, John Wiley Sons, New York, 2000 | MR
[30] A. Raue, C. Kreutz, T. Maiwald, “Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood”, Bioinformatics, 25:15 (2009), 1923–1929 | DOI
[31] D. G. Cacuci, Sensitivity and uncertainty analysis: theory, v. 1, Chapman Hall/CRC, New York, 2003 | MR
[32] K. Zh. Yao, B. M. Shaw, B. Kou, K. B. McAuley, D. W. Bacon, “Modeling ethylene/butene copolymerization with multi-site catalysts: parameter estimability and experimental design”, Polymer React. Eng., 11:3 (2003), 563–588 | DOI
[33] V. Latyshenko, O. Krivorotko, S. Kabanikhin, Sh. Zhang, V. Kashtanova, D. Yermolenko, “Identifiability analysis of inverse problems in biology”, Proc. 2 Intern. Conf. Comput. Modeling, Simulation and Appl. Mathematics, CMSAM (Beijing, China, October 22-23, 2017), DEStech, Lancaster, 2017, 567–571
[34] T. Quaiser, M. Mönnigmann, “Systematic identifiability testing for unambiguous mechanistic modeling application to JAK-STAT, MAP kinase, and NF-kB signaling pathway models”, BMC Syst. Biol., 3 (2009), 50–71 | DOI
[35] M. Rodriguez-Fernandez, J. A. Egea, J. R. Banga, BMC Bioinformatics, 7 (2006), 483–500 | DOI
[36] N. Metropolis, S. Ulam, “The Monte Carlo method”, J. Amer. Stat. Assoc., 44 (1949), 335–341 | DOI | MR | Zbl
[37] H. T. Banks, S. I. Kabanikhin, O. I. Krivorotko, D. V. Yermolenko, “A numerical algorithm for constructing an individual mathematical model of HIV dynamics at cellular level”, J. Inverse Ill-Posed Probl., 26:6 (2018), 859–873 | DOI | MR | Zbl
[38] S. I. Kabanikhin, O. I. Krivorotko, D. V. Ermolenko, V. N. Kashtanova, V. A. Latyshenko, “Inverse problems of immunology and epidemiolohy”, Eurasian J. Math. Comp. Appl., 5:2 (2017), 14–35 | MR
[39] D. S. Callaway, A. S. Perelson, “HIV-1 infection and low steady state viral loads”, Bull. Math. Biol., 64 (2001), 29–64 | DOI
[40] H. T. Banks, Sh. Hu, W. C. Thompson, Modeling and Inverse Problems in the Presence of Uncertainty, Chapman and Hall/CRC, New York, 2014 | MR