Geodesic
Commentary on the Work of Jimak S.S. et al. ``Mathematical Modeling of Open States in Double Stranded DNA Molecule Depending on $^2$H/$^1$H Ratio''
Matematičeskaâ biologiâ i bioinformatika, Tome 15 (2020) no. 1, pp. 1-3.

Voir la notice de l'article provenant de la source Math-Net.Ru

The article is analyzed Jimak S.S. et al. "Mathematical modeling of open state accounting as a function of $^2$H/$^1$H ratio in a double-stranded DNA molecule", appeared in “Mathematical Biology and Bioinformatics”. The values of H-bond energies used in the simulation as a parameter are estimated. A new mechanism for the effect of DNA deuteration on biological function of DNA described by authors is proposed. 
@article{MBB_2020_15_1_a7,
     author = {A. S. Shigaev},
     title = {Commentary on the {Work} of {Jimak} {S.S.} et al. {``Mathematical} {Modeling} of {Open} {States} in {Double} {Stranded} {DNA} {Molecule} {Depending} on $^2${H/}$^1${H} {Ratio''}},
     journal = {Matemati\v{c}eska\^a biologi\^a i bioinformatika},
     pages = {1--3},
     publisher = {mathdoc},
     volume = {15},
     number = {1},
     year = {2020},
     language = {ru},
     url = {http://geodesic.mathdoc.fr/item/MBB_2020_15_1_a7/}
}
TY  - JOUR
AU  - A. S. Shigaev
TI  - Commentary on the Work of Jimak S.S. et al. ``Mathematical Modeling of Open States in Double Stranded DNA Molecule Depending on $^2$H/$^1$H Ratio''
JO  - Matematičeskaâ biologiâ i bioinformatika
PY  - 2020
SP  - 1
EP  - 3
VL  - 15
IS  - 1
PB  - mathdoc
UR  - http://geodesic.mathdoc.fr/item/MBB_2020_15_1_a7/
LA  - ru
ID  - MBB_2020_15_1_a7
ER  - 
%0 Journal Article
%A A. S. Shigaev
%T Commentary on the Work of Jimak S.S. et al. ``Mathematical Modeling of Open States in Double Stranded DNA Molecule Depending on $^2$H/$^1$H Ratio''
%J Matematičeskaâ biologiâ i bioinformatika
%D 2020
%P 1-3
%V 15
%N 1
%I mathdoc
%U http://geodesic.mathdoc.fr/item/MBB_2020_15_1_a7/
%G ru
%F MBB_2020_15_1_a7
A. S. Shigaev. Commentary on the Work of Jimak S.S. et al. ``Mathematical Modeling of Open States in Double Stranded DNA Molecule Depending on $^2$H/$^1$H Ratio''. Matematičeskaâ biologiâ i bioinformatika, Tome 15 (2020) no. 1, pp. 1-3. http://geodesic.mathdoc.fr/item/MBB_2020_15_1_a7/

[1] S. S. Dzhimak, M. I. Drobotenko, A. A. Basov, A. A. Svidlov, M. G. Baryshev, “Mathematical Modeling of Open States in Double Stranded DNA Molecule Depending on $^2$H/$^1$H Ratio”, Math. Biol. Bioinf., 14 (2019), 612–624 | DOI

[2] U. Bockelmann, Ph. Thomen, B. Essevaz-Roulet, V. Viasnoff, F. Heslot, “Unzipping DNA with optical tweezers: High sequence sensitivity and force flips”, Biophysical Journal, 82 (2002), 1537–1553 | DOI

[3] M. Peyrard, “Using DNA to probe nonlinear localized excitations”, Europhysics Letters, 44 (1998), 271–277 | DOI

[4] S. Cocco, R. Monasson, J. F. Marko, “Force and kinetic barriers to initiation of DNA unzipping”, Physical Review E, 65 (2002), 041907 | DOI

[5] R. Krautbauer, M. Rief, H. E. Gaub, “Unzipping DNA Oligomers”, Nano Letters, 3 (2003), 493–496 | DOI

[6] A. S. Shigaev, O. A. Ponomarev, V. D. Lakhno, “Theoretical and Experimental Investigations of DNA Open States”, Math. Biol. Bioinf., 8 (2013), 553–664 | DOI

[7] M. Leijon, A. Graslund, “Effects of sequence and length on imino proton exchange and base pair opening kinetics in DNA oligonucleotide duplexes”, Nucleic Acids Research, 20 (1992), 5339–5343 | DOI

[8] M. Peyrard, “Nonlinear dynamics and statistical physics of DNA”, Nonlinearity, 17 (2004), R1–R40 | DOI | MR | Zbl