Geodesic
Flavivirus species recognition based on the polyprotein coding sequences
Matematičeskaâ biologiâ i bioinformatika, Tome 14 (2019) no. 2, pp. 533-542.

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Method recognizing the flavivirus species, including a subtype recognition, that based on the genome sequence analysis, is proposed. This method takes into consideration frequency characteristics of amino acid codons in the coding sequences of full-length polyprotein of flavivirus genomes. High reliability of the method is proved in recognizing flavivirus genomes from 15 groups of different species and sub-types, that are sufficiently represented in the GenBank database. Ten various species of the flaviviruses, four sub-types of Dengue virus and Kunjin virus, that is suggested to be a sub-type of West Nile virus, are considered in the work. 
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M. B. Chaley; Zh. S. Tyulko; V. A. Kutyrkin. Flavivirus species recognition based on the polyprotein coding sequences. Matematičeskaâ biologiâ i bioinformatika, Tome 14 (2019) no. 2, pp. 533-542. http://geodesic.mathdoc.fr/item/MBB_2019_14_2_a7/

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