Geodesic
The model of organization of coding in the genomes of prokaryotic organisms
Matematičeskaâ biologiâ i bioinformatika, Tome 11 (2016) no. 1, pp. 24-45.

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Coding DNA sequences (CDSs) analysis of a few prokaryotic organisms has been done on a basis of spectral-statistical approach (2S-approach). It is shown that the CDSs are characterized by a special type of latent periodicity, called earlier a profile periodicity. To explain the latent profile periodicity existence in DNA sequences a model of Stochastic Homogeneous Organization of Coding (SHOC-model) in the textual strings is considered. This model explains the existence of latent triplet periodicity and regularity in the CDSs. Specific manifestations of the SHOC-model are demonstrated in the numerical experiments with binary re-encoded literary text. 
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V. A. Kutyrkin; M. B. Chaley. The model of organization of coding in the genomes of prokaryotic organisms. Matematičeskaâ biologiâ i bioinformatika, Tome 11 (2016) no. 1, pp. 24-45. http://geodesic.mathdoc.fr/item/MBB_2016_11_1_a2/

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