Regularities Related to Introns Lengths Distribution
Matematičeskaâ biologiâ i bioinformatika, Tome 9 (2014) no. 2, pp. 482-490.

Voir la notice de l'article provenant de la source Math-Net.Ru

The regularities in distribution of intron lengths for genomes of 17 species belonging to different taxa (insects, fish, amphibians, reptiles, birds, mammals) were studied. It is shown that the fraction of introns with phase 1 increases with the length of the intron. It was also shown that short and long introns tend to form series. For example, the proportion of short (long) introns that follow short (long) introns is considerably higher than the proportion of short (long) introns in a genome. These patterns are shown for all considered genomes.
@article{MBB_2014_9_2_a3,
     author = {T. V. Astakhova and M. A. Roytberg and I. I. Tsitovich and V. V. Yakovlev},
     title = {Regularities {Related} to {Introns} {Lengths} {Distribution}},
     journal = {Matemati\v{c}eska\^a biologi\^a i bioinformatika},
     pages = {482--490},
     publisher = {mathdoc},
     volume = {9},
     number = {2},
     year = {2014},
     language = {ru},
     url = {http://geodesic.mathdoc.fr/item/MBB_2014_9_2_a3/}
}
TY  - JOUR
AU  - T. V. Astakhova
AU  - M. A. Roytberg
AU  - I. I. Tsitovich
AU  - V. V. Yakovlev
TI  - Regularities Related to Introns Lengths Distribution
JO  - Matematičeskaâ biologiâ i bioinformatika
PY  - 2014
SP  - 482
EP  - 490
VL  - 9
IS  - 2
PB  - mathdoc
UR  - http://geodesic.mathdoc.fr/item/MBB_2014_9_2_a3/
LA  - ru
ID  - MBB_2014_9_2_a3
ER  - 
%0 Journal Article
%A T. V. Astakhova
%A M. A. Roytberg
%A I. I. Tsitovich
%A V. V. Yakovlev
%T Regularities Related to Introns Lengths Distribution
%J Matematičeskaâ biologiâ i bioinformatika
%D 2014
%P 482-490
%V 9
%N 2
%I mathdoc
%U http://geodesic.mathdoc.fr/item/MBB_2014_9_2_a3/
%G ru
%F MBB_2014_9_2_a3
T. V. Astakhova; M. A. Roytberg; I. I. Tsitovich; V. V. Yakovlev. Regularities Related to Introns Lengths Distribution. Matematičeskaâ biologiâ i bioinformatika, Tome 9 (2014) no. 2, pp. 482-490. http://geodesic.mathdoc.fr/item/MBB_2014_9_2_a3/

[1] Fickett J. W., “The gene identification problem: an overview for developers”, Computer Chemistry, 20 (1996), 103 | DOI

[2] Burge C. B., Karlin S., “Finding the genes in genomic DNA”, Curr. Opin. Struct. Biol., 8 (1998), 346–354 | DOI

[3] Schepetkova I. L., Gelfand M. S., “Nekotorye statisticheskie osobennosti saitov splaisinga pozvonochnykh i bespozvonochnykh”, Biofizika, 42:1 (1997), 82–89

[4] Moss S. P., Joyce D. A., Humphries S., Tindall K. J., Lunt D. H., “Comparative analysis of teleost genome sequences reveals an ancient intron size expansion in the zebrafish lineage”, Genome Biol. Evol., 3 (2011), 1187–1196 | DOI

[5] Chen D., Zhang J., “Analysis of intron sequence features associated with transcriptional regulation in human genes”, PLoS ONE, 7:10 (2012), e46784 | DOI

[6] Rogozin I. B., Carmel L., Csuros M., Koonin E. V., “Origin and evolution of spliceosomal introns”, Biol. Direct., 7:11 (2012) | DOI

[7] Bradnam K. R., Korf I., “Longer first introns are a general property of eukaryotic gene structure”, PLoS ONE, 3:8 (2008), e3093 | DOI

[8] Shuang W., Zhang Z., Jun Y. U., “Systematic analysis of intron size and abundance parameters indiverse lineages”, SCIENCE CHINA Life Sciences, 56:10 (2013), 968–974 | DOI

[9] Shepard S., McCreary M., Fedorov A., “The peculiarities of large intron splicing in animals”, PLoS ONE, 4:11 (2009), e7853 | DOI

[10] Farlow A., Dolezal M., Hua L., Schlotterer C., “The genomic signature of splicing-coupled selection differs between long and short introns”, Mol. Biol. Evol., 29:1 (2012), 21–24 | DOI

[11] Marais G., Nouvellet P., Keightley P. D., Charlesworth B., “Intron size and exon evolution in drosophila”, Genetics, 170 (2005), 481–485 | DOI

[12] Vinogradov A., ““Genome design” model: Evidence from conserved intronic sequence in human-mouse comparison”, Genome Res., 16:3 (2006), 347–54 | DOI

[13] Catania F., Lynch M., “A simple model to explain evolutionary trends of eukaryotic gene architecture and expression: How competition between splicing and cleavage/polyadenylation factors may affect gene expression and splice-site recognitionin eukaryotes”, Bioessays, 35:6 (2013), 561–570 | DOI

[14] Zhu L., Zhang Y., Zhang W., Yang S., Chen J.-Q., Tian D., “Patterns of exon-intron architecture variation of genes in eukaryotic genomes”, BMC Genomics, 10 (2009), 47–53 | DOI

[15] Long M., Rosenberg C., Gilbert W., “Intron phase correlations and the evolution of the intron/exon structure of genes”, Proc. Natl. Acad. Sci., 92:26 (1995), 12495–12499 | DOI