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@article{MBB_2012_7_a6, author = {E. F. Baulin and T. V. Astakhova and M. A. Roytberg}, title = {Elements of {RNA} {Secondary} {Structures} and {Their} {Classification}}, journal = {Matemati\v{c}eska\^a biologi\^a i bioinformatika}, pages = {567--571}, publisher = {mathdoc}, volume = {7}, year = {2012}, language = {ru}, url = {http://geodesic.mathdoc.fr/item/MBB_2012_7_a6/} }
TY - JOUR AU - E. F. Baulin AU - T. V. Astakhova AU - M. A. Roytberg TI - Elements of RNA Secondary Structures and Their Classification JO - Matematičeskaâ biologiâ i bioinformatika PY - 2012 SP - 567 EP - 571 VL - 7 PB - mathdoc UR - http://geodesic.mathdoc.fr/item/MBB_2012_7_a6/ LA - ru ID - MBB_2012_7_a6 ER -
E. F. Baulin; T. V. Astakhova; M. A. Roytberg. Elements of RNA Secondary Structures and Their Classification. Matematičeskaâ biologiâ i bioinformatika, Tome 7 (2012), pp. 567-571. http://geodesic.mathdoc.fr/item/MBB_2012_7_a6/
[1] Waterman M. S. (ed.), Mathematical methods for DNA sequences, CRC Press, Boca Raton, 1989, 293 pp. <ext-link ext-link-type='mr-item-id' href='http://mathscinet.ams.org/mathscinet-getitem?mr=1047262'>1047262</ext-link><ext-link ext-link-type='zbl-item-id' href='https://zbmath.org/?q=an:0674.00024'>0674.00024</ext-link>
[2] Nussinov R., Jacobson A. B., “Fast algorithm for predicting the secondary structure of single-stranded RNA”, Proc. Natl. Acad. Sci. USA, 77 (1980), 6309–6313 <ext-link ext-link-type='doi' href='https://doi.org/10.1073/pnas.77.11.6309'>10.1073/pnas.77.11.6309</ext-link>
[3] Xia T., SantaLucia J. Jr., Burkard M. E., Kierzek R., Schroeder S. J., Jiao X., Cox C., Turner D. H., “Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson–Crick base pairs”, Biochemistry, 37 (1998), 4735
[4] Zuker M., Mathews D. H., Turner D. H., “Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide”, RNA Biochemistry and Biotechnology, NATO ASI Series, eds. J. Barciszewski, B. F. C. Clark, Kluwer Academic Publishers, Boston, 1999, 11–43
[5] Mathews D. H., Turner D. H., “Prediction of RNA secondary structure by free energy minimization”, Current Opinion in Structural Biology, 16 (2006), 270–278 <ext-link ext-link-type='doi' href='https://doi.org/10.1016/j.sbi.2006.05.010'>10.1016/j.sbi.2006.05.010</ext-link>
[6] Pleij C. W. A., “RNA Pseudoknots”, The RNA world, eds. Gesteland R. F., Atkins J. F., Cold Spring Harbor Laboratory Press, 1993, 609–613
[7] Gultyaev A. P., Olsthoorn R. C., “A family of non-classical pseudoknots in influenza A and B viruses”, RNA Biol., 7 (2010), 125–129 <ext-link ext-link-type='doi' href='https://doi.org/10.4161/rna.7.2.11287'>10.4161/rna.7.2.11287</ext-link>
[8] Condon A., Davy B., Rastegari B., Zhao S., Tarrant F., “Classifying RNA pseudoknotted structures”, Theoretical Computer Science, 320 (2004), 35–50 <ext-link ext-link-type='doi' href='https://doi.org/10.1016/j.tcs.2004.03.042'>10.1016/j.tcs.2004.03.042</ext-link><ext-link ext-link-type='mr-item-id' href='http://mathscinet.ams.org/mathscinet-getitem?mr=2060182'>2060182</ext-link><ext-link ext-link-type='zbl-item-id' href='https://zbmath.org/?q=an:1043.92008'>1043.92008</ext-link>
[9] Batenburg F. H. D. van, Gultyaev A. P., Pleij C. W. A., Ng J., Oliehoek J., “Pseudobase: a database with RNA pseudoknots”, Nucl. Acids Res., 28 (2000), 201–204 <ext-link ext-link-type='doi' href='https://doi.org/10.1093/nar/28.1.201'>10.1093/nar/28.1.201</ext-link>
[10] Taufer M., Licon A., Araiza R., Mireles D., Batenburg F. H. D. van, Gultyaev A. P., Leung M.-Y., “PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of Pseudoknots”, Nucl. Acids Res., 37 (2009), D127–D136 <ext-link ext-link-type='doi' href='https://doi.org/10.1093/nar/gkn806'>10.1093/nar/gkn806</ext-link>
[11] Haslinger C., Stadler P. F., “RNA Structures with Pseudo-knots: Graph-theoretical, Combinatorial, and Statistical Properties”, Bulletin of Mathematical Biology, 61 (1999), 437–467 <ext-link ext-link-type='doi' href='https://doi.org/10.1006/bulm.1998.0085'>10.1006/bulm.1998.0085</ext-link>
[12] Zheng G., Lu X.-J., Olson W. K., “3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures”, Nucleic Acids Res., 31 (2003), 5108–5121 <ext-link ext-link-type='doi' href='https://doi.org/10.1093/nar/gkg287'>10.1093/nar/gkg287</ext-link>
[13] Baulin E., Ivankov D., Roytberg M., “Statistics of RNA structures”, Proceedings of Moscow Conference on Computational Molecular Biology (July 21–24, 2011, Moscow), 2011, 325–326