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@article{MBB_2006_1_a2, author = {V. Yu. Lunin and P. V. Afonin and A. G. Urzhumtsev}, title = {Statistical modelling and likelihood-based choice in macromolecular crystallography}, journal = {Matemati\v{c}eska\^a biologi\^a i bioinformatika}, pages = {17--26}, publisher = {mathdoc}, volume = {1}, year = {2006}, language = {ru}, url = {http://geodesic.mathdoc.fr/item/MBB_2006_1_a2/} }
TY - JOUR AU - V. Yu. Lunin AU - P. V. Afonin AU - A. G. Urzhumtsev TI - Statistical modelling and likelihood-based choice in macromolecular crystallography JO - Matematičeskaâ biologiâ i bioinformatika PY - 2006 SP - 17 EP - 26 VL - 1 PB - mathdoc UR - http://geodesic.mathdoc.fr/item/MBB_2006_1_a2/ LA - ru ID - MBB_2006_1_a2 ER -
%0 Journal Article %A V. Yu. Lunin %A P. V. Afonin %A A. G. Urzhumtsev %T Statistical modelling and likelihood-based choice in macromolecular crystallography %J Matematičeskaâ biologiâ i bioinformatika %D 2006 %P 17-26 %V 1 %I mathdoc %U http://geodesic.mathdoc.fr/item/MBB_2006_1_a2/ %G ru %F MBB_2006_1_a2
V. Yu. Lunin; P. V. Afonin; A. G. Urzhumtsev. Statistical modelling and likelihood-based choice in macromolecular crystallography. Matematičeskaâ biologiâ i bioinformatika, Tome 1 (2006), pp. 17-26. http://geodesic.mathdoc.fr/item/MBB_2006_1_a2/
[1] Bricogne G., “Maximum Entropy and the Foundations of Direct Methods”, Acta Cryst. A, 40 (1984), 410–455 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0108767384000866'>10.1107/S0108767384000866</ext-link>
[2] Bricogne G., Gilmore C. J., “A multisolution method of phase determination by combined maximization of entropy and likelihood. I. Theory, algorithms and strategy”, Acta Cryst. A, 46 (1990), 284–297 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0108767389012882'>10.1107/S0108767389012882</ext-link>
[3] Bricogne G., Irwin J., “Maximum-Likelihood Refinement of incomplete models with BUSTER + TNT”, Proceedings of the CCP4 Study Weekend (Daresbury Laboratory, Warrington. England), 1996, 85–92
[4] Cochran W., “Relations between the phases of structure factors”, Acta Cryst., 5 (1955), 473–478 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0365110X55001485'>10.1107/S0365110X55001485</ext-link>
[5] Giacovazzo C., Direct Phasing in Crystallography, Oxford University Press, 1999
[6] Hauptman H., Karle J., Solution of the phase problem. I. The centrosymmetric crystal, American Crystallographic Association Monograph, 3, The Letter Shop, Wilmington, 1953 <ext-link ext-link-type='mr-item-id' href='http://mathscinet.ams.org/mathscinet-getitem?mr=67778'>67778</ext-link>
[7] Lunin V.Yu., Urzhumtsev A.G., “Improvement of Protein Phases by Coarse Model Modification”, Acta Cryst. A, 40 (1984), 269–277 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0108767384000544'>10.1107/S0108767384000544</ext-link>
[8] Lunin V.Yu., Skovoroda T.P., “R-free Likelihood-Based Estimates of Errors for Phases Calculated from Atomic Models”, Acta Cryst. A, 51 (1995), 880–887 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S010876739500688X'>10.1107/S010876739500688X</ext-link>
[9] Lunin V.Yu., Lunina N.L., Petrova T.E., Urzhumtsev A.G., Podjarny A.D., “On the Ab initio solution of the Phase Problem for Macromolecules at Very Low Resolution. II. Generalized Likelihood Based Approach to Cluster Discrimination”, Acta Cryst. D, 54 (1998), 726–734 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0907444997012456'>10.1107/S0907444997012456</ext-link>
[10] Lunin V.Y., “The likelihood based choice of priors in statistical approaches to the phase problem”, Direct Methods for Solving Macromolecular Structures, NATO ASI Series C, 507, ed. S. Fortier, Kluwer Academic Publishers, The Netherlands, 1997, 451–454
[11] Lunin V.Y., Lunina N.L., Petrova T.E., Skovoroda T.P., Urzhumtsev A.G., Podjarny A.D., “Low-resolution ab initio phasing: problems and advances”, Acta Cryst. D, 56 (2000), 1223–1232 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0907444900010088'>10.1107/S0907444900010088</ext-link>
[12] Lunin V.Y., Urzhumtsev A.G., “Maximal Likelihood Refinement. It works, but why?”, CCP4 Newsletter on Protein Crystallography, 37 (1999), 14–28
[13] Lunin V.Y., Afonine P.V., Urzhumtsev A.G., “Likelihood-based refinement. I. Irremovable model errors”, Acta Cryst. A, 58 (2002), 270–282 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0108767302001046'>10.1107/S0108767302001046</ext-link>
[14] Luzzati V., “Traitement Statistique des Erreurs dans la Determination des Structures Cristallines”, Acta Cryst., 5 (1952), 802–810 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0365110X52002161'>10.1107/S0365110X52002161</ext-link>
[15] Murshudov G.N., Vagin A.A., Dodson E.J., “Refinement of Macromolecular Structures by the Maximum-Likelihood Method”, Acta Cryst. D, 53 (1997), 240–255 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0907444996012255'>10.1107/S0907444996012255</ext-link>
[16] Pannu N.S., Read R.J., “Improved Structure Refinement Through Maximum Likelihood”, Acta Cryst. A, 52 (1996), 659–668 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0108767396004370'>10.1107/S0108767396004370</ext-link>
[17] Petrova T.E., Lunin V.Y., Podjarny A.D., “A likelihood-based search for the macromolecular position in the crystalline unit cell”, Acta Cryst.A, 55 (1999), 739–745 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0108767399001890'>10.1107/S0108767399001890</ext-link>
[18] Petrova T.E., Lunin V.Y., Podjarny A.D., “Ab initio low-resolution phasing in crystallography of macromolecules by maximization of likelihood”, Acta Cryst. D, 56 (2000), 1245–1252 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0907444900009343'>10.1107/S0907444900009343</ext-link>
[19] Read R.J., “Improved Fourier Coefficients for Maps Using Phases from Partial Structures with Errors”, Acta Cryst. A, 42 (1986), 140–149 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0108767386099622'>10.1107/S0108767386099622</ext-link>
[20] Read R.J., “Structure-Factor Probabilities for Related Structures”, Acta Cryst. A, 46 (1990), 900–912 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0108767390005529'>10.1107/S0108767390005529</ext-link>
[21] Sheldrick G.M., Hauptman H.A., Weeks C.M., Miller R., Usón I., “Direct methods”, International Tables for Crystallography, v. F, eds. Rossmann M., Arnold E., Kluwer Academic Publishers, 2001, 333–345
[22] Srinivasan R., Parthasarathy S., Some Statistical Applications in X-ray Crystallography, Pergamon Press, Oxford, 1976
[23] Wilson A.J.C., “The Probability Distribution of X-ray Intensities”, Acta Cryst., 2 (1949), 318–321 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0365110X49000813'>10.1107/S0365110X49000813</ext-link><ext-link ext-link-type='mr-item-id' href='http://mathscinet.ams.org/mathscinet-getitem?mr=83266'>83266</ext-link>
[24] Woolfson M.M., “The statistical theory of sign relationship”, Acta Cryst., 7 (1954), 61–64 <ext-link ext-link-type='doi' href='https://doi.org/10.1107/S0365110X54000102'>10.1107/S0365110X54000102</ext-link>