Automating the calculation of genetic similarity
News of the Kabardin-Balkar scientific center of RAS, no. 6-2 (2017), pp. 124-128.

Voir la notice de l'article provenant de la source Math-Net.Ru

The construction of phylogenetic trees is the most important task in biological research. Within the scope of this research subject, there arises the problem of automating the calculation of genetic distance and genetic similarity between populations of one species. The object of the study is the succession of sequence of alleles in the loci of polytene chromosomes. The article presents the program Chironomus, written in C#, which allows to quickly and conveniently calculate the genetic distance for all the main methods. The developed program significantly simplifies genetic studies, allowing to simply enter data and obtain results simultaneously for a large number of compared populations.
Keywords: automation of computing, genetic distances, genetic similarity, Chironomus
Mots-clés : chironomids, polytene chromosomes.
@article{IZKAB_2017_6-2_a12,
     author = {M. A. Kazakov},
     title = {Automating the calculation of genetic similarity},
     journal = {News of the Kabardin-Balkar scientific center of RAS},
     pages = {124--128},
     publisher = {mathdoc},
     number = {6-2},
     year = {2017},
     language = {ru},
     url = {http://geodesic.mathdoc.fr/item/IZKAB_2017_6-2_a12/}
}
TY  - JOUR
AU  - M. A. Kazakov
TI  - Automating the calculation of genetic similarity
JO  - News of the Kabardin-Balkar scientific center of RAS
PY  - 2017
SP  - 124
EP  - 128
IS  - 6-2
PB  - mathdoc
UR  - http://geodesic.mathdoc.fr/item/IZKAB_2017_6-2_a12/
LA  - ru
ID  - IZKAB_2017_6-2_a12
ER  - 
%0 Journal Article
%A M. A. Kazakov
%T Automating the calculation of genetic similarity
%J News of the Kabardin-Balkar scientific center of RAS
%D 2017
%P 124-128
%N 6-2
%I mathdoc
%U http://geodesic.mathdoc.fr/item/IZKAB_2017_6-2_a12/
%G ru
%F IZKAB_2017_6-2_a12
M. A. Kazakov. Automating the calculation of genetic similarity. News of the Kabardin-Balkar scientific center of RAS, no. 6-2 (2017), pp. 124-128. http://geodesic.mathdoc.fr/item/IZKAB_2017_6-2_a12/

[1] M. Nei, “The genetic distance between populations”, American Naturalist, 106 (1972), 283–29 | DOI

[2] L. L. Cavalli-Sforza; A. W.F. Edwards, “Phylogenetic Analysis Models and Estimation Procedures”, The American Journal of Human Genetics, 1967, no. 19 (3), no. Part I, May

[3] John Reynolds; B. S. Weir; C. Clark Cockerham, “Estimation of the coancestry coefficient: Basis for a short-term genetic distance”, Genetics. November, 105 (1983), 767–779 | MR

[4] J. Felsenstein, Phylogeny Inference Package (PHYLIP), Version 3.5., University of Washington, Seattle, 1993

[5] K. Tamura, “MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0”, Molecular Biology and Evolution, 30 (2013), 2725–2729 | DOI