A Modeling Framework For Immune-related Diseases
Mathematical modelling of natural phenomena, Tome 7 (2012) no. 3, pp. 40-48.

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About twenty five years ago the first discrete mathematical model of the immune system was proposed. It was very simple and stylized. Later, many other computational models have been proposed each one adding a certain level of sophistication and detail to the description of the system. One of these, the Celada-Seiden model published back in 1992, was already mature at its birth, setting apart from the topic-specific nature of the other models. This one was not just a model but rather a framework with which one could implement his own immunological theories. Here we describe this computational framework, developed to perform simulations of different pathologies that are directly or indirectly connected to the immune system. We briefly describe the system first, then we report on few applications so to give the reader a clear idea of its practical utility in clinical research problems.
DOI : 10.1051/mmnp/20127304

F. Castiglione 1 ; S. Motta 2 ; F. Pappalardo 2 ; M. Pennisi 2

1 National Research Council of Italy, Rome, Italy
2 University of Catania, Catania, Italy
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F. Castiglione; S. Motta; F. Pappalardo; M. Pennisi. A Modeling Framework For Immune-related Diseases. Mathematical modelling of natural phenomena, Tome 7 (2012) no. 3, pp. 40-48. doi : 10.1051/mmnp/20127304. http://geodesic.mathdoc.fr/articles/10.1051/mmnp/20127304/

[1] A.S. Perelson, G. Weisbuch (Eds.). Theoretical Immunology, Part One. Springer, Berlin, 1988.

[2] A.S. Perelson (Ed.). Theoretical Immunology, Part Two. Addison Wesley, Redwood City, CA, 1988.

[3] A.S. Perelson, G. Weisbuch Rev. Mod. Phys. 1997 1219 1267

[4] R. Puzone, B. Kohler, P.E. Seiden, F. Celada Future Gener. Comput. Syst. 2002 961 972

[5] M. Meier-Schellersheim, G. Mack. Simmune : A tool for simulating and analyzing immune system behavior. Das Deutsche Elektronen-Synchrotron Technical Report, 1999.

[6] F. Castiglione Scholarpedia 2006 1562

[7] M. Kaufman, J. Urbain, R. Thomas J. Th. Biol. 1985 527 561

[8] F. Celada, P.E. Seiden Eur. J. Immunol. 1996 1350 1358

[9] F. Celada, P.E. Seiden Immunol. Today 1992 56 62

[10] P.E. Seiden, F. Celada J. Th. Biol. 1992 329 357

[11] D. Morpurgo, R. Serenthà, P.E. Seiden, F. Celada Int. Immunol. 1995 505 516

[12] F. Castiglione, F. Poccia, G. D’Offizi, M. Bernaschi AIDS Res. Human Retrovirus 2004 1316 1325

[13] F. Castiglione, K.A. Duca, A.S. Jarrah, R. Laubenbacher, K. Luzuriaga, D. Hochberg, D.A. Thorley-Lawson Bioinformatics 2007 1371 1377

[14] F. Castiglione, V. Sleitser, Z. Agur. Analyzing hypersensitivity to chemotherapy in a Cellular Automata model of the immune system, in Cancer Modeling and Simulation, L. Preziosi (Ed.), pages 333–365. Chapman Hall/CRC Press, London, UK, 2003.

[15] F. Pappalardo, P-L. Lollini, F. Castiglione, S. Motta Bioinformatics 2005 2891 2897

[16] P. Paci, R. Carello, M. Bernaschi, G. D’Offizi, F. Castiglione BMC Infect. Dis. 2009 172

[17] J.D. Farmer, N.H. Packard, A.S. Perelson Physica D 1986 187 204

[18] P. Paci, F. Castiglione, M. Bernaschi, V. Baldazzi. A discrete/continuous model of anti-HIV response and therapy. IEEE Computer Society, Digital library Proceedins UKSIM, pages 481–486, 2008.

[19] V. Baldazzi, P. Paci, M. Bernaschi, F. Castiglione BMC Bioinformatics 2009 387

[20] P. Paci, F. Martini, M. Bernaschi, F. D’Offizi, F. Castiglione BMC Infectious Diseases 2011 56

[21] F. Castiglione, P. Paci PLoS ONE 2010 e15294

[22] L.L. Laichalk, D.A. Thorley-Lawson J. Virol. 2005 1296 1307

[23] A.B. Kay Ab N. Engl. J. Med. 2001 30 37

[24] R.A. Goldsby, T.J. Kindt, B.A. Osborne. Kuby Immunology, IV ed.. W.H. Freeman Co., NY, 2000.

[25] A.B. Kay N. Engl. J. Med. 2001 109 113

[26] S.T. Holgate British Med. J. 2000 231 234

[27] D. Santoni, M. Pedicini, F. Castiglione Bioinformatics 2008 1374 1380

[28] G.K. Hansson N. Engl. J. Med. 2002 1685 1695

[29] A. Romero-Corral, V.K. Somers, J. Korinek, J. Sierra-Johnson, R.J. Thomas, T.G. Allison, F. Lopez-Jimenez Rev. Invest. Clin. 2006 237 244

[30] C. Weber, A. Zernecke, P. Libby Nat. Rev. Immunol. 2008 802 815

[31] F. Pappalardo, S. Musumeci, S. Motta Bioinformatics 2008 1715 1721

[32] M. Meier-Schellersheim. The immune system as a complex system : Description and simulation of the interactions of its constituents. Ph.D. thesis, University of Hamburg, Germany, 2001.

[33] S. Efroni, D. Harel, I.R. Cohen Genome Res. 2003 2485 2497

[34] J.K. Kalita, K. Chandrashekar, R. Hans, R. Selvam Int. J. Bioinf. Res. Appl. 2006 63 88

[35] V.A. Folcik, G.C. An, C.G. Orosz Theor. Biol. Med. Model. 2007 39

[36] R.C. Laubenbacher, A.S. Jarrah, H.S. Mortveit, S.S. Ravi. A mathematical formalism for agent-based modeling. CoRR., (2008), abs/0801.0249.

[37] S.Y. Del Valle, P.D. Stroud, J.P. Smith, S.M. Mniszewski, J.M. Riese, S.J. Sydoriak, D.A. Kubicek. Episims : Epidemic simulation system. Los Alamos Unlimited Release (LAUR), (2006), 06-06714.

[38] S. Mniszewski, S.Y. Del Valle, P. Stroud, J. Riese, S. Sydoriak. Episims simulation of a multi-component strategy for pandemic influenza. Proceedings of the 2008 Spring Simulation Multiconference, 2008.

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