Geodesic

Issue no. 1 Table of Contents

Prospects for using of data centers in solution of problems of mathematical biology and bioinformatics
p. 60-71
Stem multiplets: a new approach to the description of tertiary RNA motifs
p. 54-59
A search for relict ribonucleotide and amino acid sequences that played a key role in the development of the ribosome and modern protein diversity
p. 116-130
Rep-elements of the Escherichia coli genome and transcription signals: positional and functional analysis
p. 245-259
Mechanisms regulating Escherichia coli dps gene expression under stress: reconstruction on kinetic data
p. 1-14
Ground vegetation modeling through functional species groups and patches in the forest floor
p. 15-33
Flow in antroduodenal part of digestive tract: mathematical model and some results
p. 34-53
Dynamics of ensemble of active brownian particles controlled by noise
p. 72-87
Computer modeling and molecular dynamics of polarization switching in the ferroelectric films PVDF and P(VDF-TrFE) on nanoscale
p. 131-153
On the types of bacterial growth laws
p. 154-163
Kinks behavior near the boundaries separating homogeneous regions of DNA
p. 164-177
Modeling of the phytoplankton dynamics considering the mechanisms of ectocrine regulation
p. 178-192
On the mechanisms of nitrite utilization by Escherichia coli cells during stationary growth
p. 193-205
Assessment of health status of a population on the basis of entropy modeling
p. 206-219
Using clustering by coupled map lattices for metapopulation dynamics simulation
p. 220-233
Simulation of spontaneous activity in neuronal cultures with long-term plasticity
p. 234-244
Bipolaron in anisotropic crystals (arbitrary coupling)
p. 283-293
Maya-K-PDB software for the three-dimensional modeling and visualization of the conformational dynamics of biomacromolecules
p. 260-282
How animals find their way in space? Place cells and grid cells
p. 88-115

Issue no. 2 Table of Contents

Research of mechanical characteristics of bone tissues by means of the developed automated system of medical appointment
p. 548-561
Cloud computing: information security concerns
p. 567-579
Transcriptional landscape variability within the bacterial oppA-oppB intergenic region as revealed by computational search for the potential starts of RNA synthesis
p. 294-308
Identification of novel potential inhibitors of the HIV-1 gp41 protein by virtual screening and molecular modeling methods
p. 325-343
Structural-statistical properties of DNA coding regions
p. 387-397
Dynamic regimes of local homogeneous population with delayed density dependence
p. 309-324
Simulation of electrical activity of neurons using parallel computing techniques
p. 344-355
Analysis of the computational and experimental studies of the polarization switching in the PVDF and P(VDF-TrFE) ferroelectric films at the nanoscale
p. 372-386
Effects of the аspen short-rotation plantation on the C and N biological cycles in boreal forests: the model experiment
p. 398-415
Complex plankton dynamics in a topographic eddy
p. 416-426
Inclusion of the most important multi-particle interactions in the amber force field and application of the revised force field to molecular dynamics calculations
p. 427-435
Functional heterogeneity arising due to electrical and mechanical interactions between cardial myocytes in mathematical model of homogeneous myocardial fiber
p. 436-454
Mathematical model of the humoral immune response: focusing on Th17 autoimmunity
p. 455-472
The random walks between pseudo-specific DNA sites as model of the facilitated diffusion of DNA-binding proteins
p. 473-481
Modeling of processes of photosynthesis and photorespiration of $C_3$-plants
p. 482-507
The use of connected masks for reconstructing the single particle image from X-ray diffraction data. II. The dependence of the accuracy of the solution on the sampling step of experimental data
p. 508-525
Estimate of the free energy using calculations of dynamics in the semiclassical Holstein model
p. 562-566
Inclusion of the most important multi-particle interactions in the AMBER force field and optimization of energy parameters of the revised force field
p. 580-592
Computational complexity of prototype and feature selection for isotonic classification problems
p. 356-371
Personalization of parameters and validation of model of the human cardiovascular system
p. 526-547

Issue no. 3 Table of Contents

The use of connected masks for reconstructing the single particle image from X-ray diffraction data
p. t1-t19
On the types of bacterial growth laws
p. t20-t28
Promoter islands in the genome of E. coli: comparative analysis against AT-rich sequences
p. t29-t38
A search for relict ribonucleotide and amino acid sequences that played a key role in the development of the ribosome and modern protein diversity
p. t39-t55
The use of connected masks for reconstructing the single particle image from X-ray diffraction data. II. The dependence of the accuracy of the solution on the sampling step of experimental data
p. t56-t72