Geodesic
Algorithm for Analysizing AFM Images with Complex Morphology
Učënye zapiski Kazanskogo universiteta. Seriâ Fiziko-matematičeskie nauki, Kazanskii Gosudarstvennyi Universitet. Uchenye Zapiski. Seriya Fiziko-Matematichaskie Nauki, Tome 150 (2008) no. 2, pp. 220-227

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In this work, a new algorithm for analyzing AFM images of nanoparticles was proposed. This algorithm takes into account large-scale roughness of surface and adhered particles. The quality of the algorithm was tested on model surfaces with nanoparticles. One of the possible uses for this algorithm is the analysis of the catalytic systems with metal nanoparticles on a surface. 
@article{UZKU_2008_150_2_a31,
     author = {A. P. Chuklanov and P. A. Borodin and S. A. Ziganshina and A. A. Bukharaev},
     title = {Algorithm for {Analysizing} {AFM} {Images} with {Complex} {Morphology}},
     journal = {U\v{c}\"enye zapiski Kazanskogo universiteta. Seri\^a Fiziko-matemati\v{c}eskie nauki},
     pages = {220--227},
     publisher = {mathdoc},
     volume = {150},
     number = {2},
     year = {2008},
     language = {ru},
     url = {http://geodesic.mathdoc.fr/item/UZKU_2008_150_2_a31/}
}
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A. P. Chuklanov; P. A. Borodin; S. A. Ziganshina; A. A. Bukharaev. Algorithm for Analysizing AFM Images with Complex Morphology. Učënye zapiski Kazanskogo universiteta. Seriâ Fiziko-matematičeskie nauki, Kazanskii Gosudarstvennyi Universitet. Uchenye Zapiski. Seriya Fiziko-Matematichaskie Nauki, Tome 150 (2008) no. 2, pp. 220-227. http://geodesic.mathdoc.fr/item/UZKU_2008_150_2_a31/