Geodesic
Manageable Workflows for Processing Parallel Sequencing Data
Serdica Journal of Computing, Tome 8 (2014) no. 1, pp. 1-14.

Voir la notice de l'article provenant de la source Bulgarian Digital Mathematics Library

Data analysis after parallel sequencing is a process that uses combinations of software tools that is often subject to experimentation and on-the-fly substitution, with the necessary file conversion. This article presents a developing system for creating and managing workflows aiding the tasks one encounters after parallel sequences, particularly in the area of metagenomics. The semantics, description language and software implementation aim to allow the creation of flexible, configurable workflows that are suitable for sharing and are easy to manipulate through software or by hand. The execution system design provides user-defined operations and interchangeability between an operation and a workflow. This allows significant extensibility, which can be further complemented with distributed computing and remote management interfaces.
Keywords: Next-Generation Sequencing, Metagenomics, Workflow Design, Data Analysis, YAML 
@article{SJC_2014_8_1_a0,
     author = {Krachunov, Milko and Kulev, Ognyan and Simeonova, Valeriya and Nisheva, Maria and Vassilev, Dimitar},
     title = {Manageable {Workflows} for {Processing} {Parallel} {Sequencing} {Data}},
     journal = {Serdica Journal of Computing},
     pages = {1--14},
     publisher = {mathdoc},
     volume = {8},
     number = {1},
     year = {2014},
     language = {en},
     url = {http://geodesic.mathdoc.fr/item/SJC_2014_8_1_a0/}
}
TY  - JOUR
AU  - Krachunov, Milko
AU  - Kulev, Ognyan
AU  - Simeonova, Valeriya
AU  - Nisheva, Maria
AU  - Vassilev, Dimitar
TI  - Manageable Workflows for Processing Parallel Sequencing Data
JO  - Serdica Journal of Computing
PY  - 2014
SP  - 1
EP  - 14
VL  - 8
IS  - 1
PB  - mathdoc
UR  - http://geodesic.mathdoc.fr/item/SJC_2014_8_1_a0/
LA  - en
ID  - SJC_2014_8_1_a0
ER  - 
%0 Journal Article
%A Krachunov, Milko
%A Kulev, Ognyan
%A Simeonova, Valeriya
%A Nisheva, Maria
%A Vassilev, Dimitar
%T Manageable Workflows for Processing Parallel Sequencing Data
%J Serdica Journal of Computing
%D 2014
%P 1-14
%V 8
%N 1
%I mathdoc
%U http://geodesic.mathdoc.fr/item/SJC_2014_8_1_a0/
%G en
%F SJC_2014_8_1_a0
Krachunov, Milko; Kulev, Ognyan; Simeonova, Valeriya; Nisheva, Maria; Vassilev, Dimitar. Manageable Workflows for Processing Parallel Sequencing Data. Serdica Journal of Computing, Tome 8 (2014) no. 1, pp. 1-14. http://geodesic.mathdoc.fr/item/SJC_2014_8_1_a0/