Geodesic
Fast algorithm for finding mean minimum distances
Modelirovanie i analiz informacionnyh sistem, Tome 14 (2007) no. 3, pp. 50-52

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Let $\xi_0,\dots,\xi_n$ be strings drawn from some finite alphabet. In this paper we describe an algorithm for finding mean minimum distances between strings $\xi_0,\dots,\xi_s$ for all $s\le n$. The complexity of the algorithm is $\mathcal O(nm)$, where $m$ is the length of strings. 
@article{MAIS_2007_14_3_a4,
     author = {N. E. Timofeeva},
     title = {Fast algorithm for finding mean minimum distances},
     journal = {Modelirovanie i analiz informacionnyh sistem},
     pages = {50--52},
     publisher = {mathdoc},
     volume = {14},
     number = {3},
     year = {2007},
     language = {ru},
     url = {http://geodesic.mathdoc.fr/item/MAIS_2007_14_3_a4/}
}
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N. E. Timofeeva. Fast algorithm for finding mean minimum distances. Modelirovanie i analiz informacionnyh sistem, Tome 14 (2007) no. 3, pp. 50-52. http://geodesic.mathdoc.fr/item/MAIS_2007_14_3_a4/