Cycles of functioning of regulatory circuits of the gene network discrete models
Diskretnyj analiz i issledovanie operacij, Tome 18 (2011) no. 3, pp. 65-75.

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The paper describes a new class of cycles of the functional graphs identified by the discrete models of the gene network regulatory circuits with the threshold functions. A description of the class of cycles is obtained depending on the value of $p$ which is the threshold weight of the functions values and the number of the network vertices $n$. $P$-property criterion is proved as well as the theorem of reducibility of the cycles description for any $p>3$ to the description of 4-property cycles and hereditary cycles for $p=3$. Ill. 1, bibliogr. 9.
Keywords: gene network, discrete model, regulatory circuit, functional graph cycle, threshold function.
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E. O. Kutumova. Cycles of functioning of regulatory circuits of the gene network discrete models. Diskretnyj analiz i issledovanie operacij, Tome 18 (2011) no. 3, pp. 65-75. http://geodesic.mathdoc.fr/item/DA_2011_18_3_a5/

[1] Grigorenko E. D., Evdokimov A. A., Likhoshvai V. A., Lobareva I. A., “Nepodvizhnye tochki i tsikly avtomatnykh otobrazhenii, modeliruyuschikh funktsionirovanie gennykh setei”, Vestn. TGU, 14 (2005), 206–212

[2] Evdokimov A. A., Likhovidova E. O., “Diskretnaya model gennoi seti tsirkulyantnogo tipa s porogovymi funktsiyami”, Vestn. TGU, 2:3 (2008), 18–21

[3] Likhoshvai V. A., Golubyatnikov V. P., Demidenko G. V., Evdokimov A. A., Matveeva I. I., Fadeev S. I., “Teoriya gennykh setei”, Sistemnaya kompyuternaya biologiya, Izd-vo SO RAN, Novosibirsk, 2008, 397–480

[4] Ore O., Teoriya grafov, Nauka, M., 1980, 336 pp. | MR

[5] Evdokimov A. A., Kutumova E. O., “The discrete model of the gene networks regulatory loops with the threshold functions”, Proc. 7th Int. Conf. on bioinformatics of genom regulation and structure (Novosibirsk, June 20–27, 2010), SB RAS, Novosibirsk, 2010, 155

[6] Kauffman S. A., Smith R. G., “Adaptive automata based on Darwinian selection”, Physica D, 22:1–3 (1986), 68–82 | DOI | MR

[7] Kauffman S. A., At home in the universe: the search for the laws of self-organization and complexity, Oxford Univ. Press, Oxford, 1995, 321 pp.

[8] Komarov A. V., Akberdin I. R., Ozonov E. A., Evdokimov A. A., “On the reconstruction of a genetic automation on the basis of Boolean dynamic data”, Proc. 5th Int. Conf. on bioinformatics of genom regulation and structure (Novosibirsk, July 16–22, 2006), v. 3, SB RAS, Novosibirsk, 2006, 69–73

[9] Kutumova E. O., Evdokimov A. A., “Reversible states of the functioning of regulatory circuits discrete models of gene networks”, Vestn. TGU, 14:1 (2011), 85–94