Mathematical and Computational Models in Tumor Immunology
Mathematical modelling of natural phenomena, Tome 7 (2012) no. 3, pp. 186-203.

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The immune system is able to protect the host from tumor onset, and immune deficiencies are accompanied by an increased risk of cancer. Immunology is one of the fields in biology where the role of computational and mathematical modeling and analysis were recognized the earliest, beginning from 60s of the last century. We introduce the two most common methods in simulating the competition among the immune system, cancers and tumor immunology strategies: differential equations and rule-based models. Several specific implementations are presented, describing in details how they work and how they advance or contribute the field of tumor immunology.
DOI : 10.1051/mmnp/20127312

F. Pappalardo 1 ; A. Palladini 1 ; M. Pennisi 1, 2, 3 ; F. Castiglione 3 ; S. Motta 1, 2, 3

1 Università degli Studi di Catania, Catania, Italy
2 Cancer Research Section, Department of Experimental Pathology, University of Bologna, Bologna, Italy
3 Institute for Computing Applications "M. Picone", National Research Council of Italy, Viale Manzoni 30, 00185 Rome, Italy
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F. Pappalardo; A. Palladini; M. Pennisi; F. Castiglione; S. Motta. Mathematical and Computational Models in Tumor Immunology. Mathematical modelling of natural phenomena, Tome 7 (2012) no. 3, pp. 186-203. doi : 10.1051/mmnp/20127312. http://geodesic.mathdoc.fr/articles/10.1051/mmnp/20127312/

[1] A.K. Abbas, A.H. Lichtman, S. Pillai. Cellular and Molecular Immunology, 6th edn. (Elsevier, 2007).

[2] T. Alarcon, H.M. Byrne, P.K. Maini SIAM. Multiscale Model Simul. 2005 440 475

[3] R. Antia, C.T. Bergstrom, S.S. Pilyugin, S.M. Kaech, R. Ahmed J Theor Biol 2003 585 598

[4] V. Apostolopoulos, C. Osinski, I.F. Mckenzie Nat. Med 1998 315 320

[5] T. Barthlott, G. Kassiotis, B. Stockinger J. Exp. Med 2003 451 460

[6] G.I. Bell Nature 1970 739 744

[7] N. Bellomo, M. Delitala Physics of Life Reviews 2008 183 206

[8] G.A. Bocharov J Theor Biol. 1998 283 308

[9] K. Boggio, G. Nicoletti, E. Di Carlo, F. Cavallo, L. Landuzzi, C. Melani, M. Giovarelli, I. Rossi, P. Nanni, C. De Giovanni, P. Bouchard, S. Wolf, A. Modesti, P. Musiani, P.L. Lollini, M.P. Colombo, G. Forni J Exp Med 1998 589 596

[10] F. Castiglione, F. Toschi, M. Bernaschi, S. Succi, R. Benedetti, B. Falini, A. Liso J Theo Biol 2005 390 400

[11] F. Cavallo, R.A. Calogero, G. Forni Nat Rev Cancer 2007 707 713

[12] F. Cavallo, C. De Giovanni, P. Nanni, G. Forni, P.L. Lollini Cancer Immunol Immunother 2011 319 326

[13] F. Celada, P.E. Seiden Today 1992 56 62

[14] F. Celada, P.E. Seiden Eur J Immunol. 1996 1350 1358

[15] D. Chowdhury, D. Stauffer, P.V. Choudary J Theor Biol 1990 207 215

[16] I.R. Cohen, H. Atlan J Autoimmun. 1989 613 625

[17] C. De Giovanni, G. Nicoletti, L. Landuzzi, A. Astolfi, S. Croci, A. Comes, S. Ferrini, R. Meazza, M. Iezzi, E. Di Carlo, P. Musiani, F. Cavallo, P. Nanni, P.L. Lollini Cancer Res 2004 4001 4009

[18] G.P. Dunn, L.J. Old, R.D. Schreiber Immunity 2004 137 148

[19] S. Feyerabend, S. Stevanovic, C. Gouttefangeas Prostate 2009 917 927

[20] O.J. Finn N Engl J Med 2008 2704 2715

[21] S. Forrest, Beauchemin Immunol Rev. 2007 176 197

[22] R.A. Gatenby, P.K. Maini, E.T. Gawlinski Appl. Math. Letters 2002 339 345

[23] M. Halling-Brown, F. Pappalardo, N. Rapin, P. Zhang Philosophical Transactions A 2010 2799 2815

[24] M. Jílek, J. Ŝterzl. Model of Differentiation of Immunologically Competent Cell, in Developmental Aspects of Antibody Formation and Structure. (eds.), Academia, Prague, (1970) 963-981.

[25] M. Kaufman, J. Urbain, R. Thomas J Theor Biol. 1985 527 561

[26] R.M. Kedl, J.W. Kappler, P. Marrack Curr. Opin. Immunol. 2003 120 127

[27] R.M. Kedl, B.C. Schaefer, J.W. Kappler, P. Marrack Nat. Immunol 2002 27 32

[28] S. Kim-Schulze, B. Taback, H.L. Kaufman Surgical Oncology Clinics of North America 2007 793 818

[29] Z. Kirkali, E. T Uzel Future Oncology 2009 871 888

[30] P. Klenerman, R.M. Zinkernagel Nature 1998 482 485

[31] S. Koido, E. Hara, S. Homma, et al. Cancer vaccine by fusions of dendritic and cancer cells, Clinical and Developmental Immunology, 2009 (657369) (2009).

[32] C.A. Kruse, L. Cepeda, B. Owens, S.D. Johnson, J. Stears, K.O. Lillehei Cancer Immunology Immunotherapy 1997 77 87

[33] Ha Youn Lee, D.J. Topham, Sung Yong Park, J. Hollenbaugh Journal of Virology 2009 7151 7165

[34] S. Liang, K. Mozdzanowska, G. Palladino, W. Gerhard J. Immunol 1994 1653 1661

[35] A. Lin, A. Schildknecht, L.T. Nguyen, P.S. Ohashi Immunology Letters 2010 77 84

[36] J.F. Lynch,. A Logical Characterization of Individual-Based Models, 23rd Annual IEEE Symposium on Logic in Computer Science, (2008) 379-390.

[37] P.-L. Lollini, F. Cavallo, P. Nanni, G. Forni Nat. Rev. Cancer 2006 204 216

[38] P.L. Lollini, G. Nicoletti, L. Landuzzi, F. Cavallo, G. Forni, C. De Giovanni, P. Nanni. Vaccines and other immunological approaches for cancer immunoprevention, Curr Drug Targets (2010) Epub ahead of print.

[39] Y. Louzoun Immunological Reviews 2007 9 20

[40] P. Manneville and Al. Cellular Automata and Modeling of Complex Physical Systems, Springer Verlag Series in Physics. 46, (1989).

[41] A. Mantovani, P. Allavena, A. Sica, F. Balkwill Nature 2008 436 444

[42] D.F. Mcdermott Cancer 2009 2298 2305

[43] M. MezÂťard, G. Parisi, M. Virasoro. Spin Glass Theory and Beyond, World Scientific, Singapore (1988).

[44] S. Motta, F. Castiglione, P.-L. PLollini, F. Pappalardo. Modelling Vaccination Schedules for a Cancer Immunoprevention Vaccine, Immunome Research, 1 :5, (2005) doi :10.1186/1745-7580-1-5.

[45] P. Nanni, G. Nicoletti, C. De Giovanni, L. Landuzzi, E. Di Carlo, F. Cavallo, S.M. Pupa, I. Rossi, M.P. Colombo, C. Ricci, A. Astolfi, P. Musiani, G. Forni, P.L. Lollini J Exp Med 2001 1195 1205

[46] P. Nanni, L. Landuzzi, G. Nicoletti, C. De Giovanni, I. Rossi, S. Croci, A. Astolfi, M. Iezzi, E. Di Carlo, P. Musiani, G. Forni, P.L. Lollini J Immunol 2004 2288 2296

[47] P. Nanni, G. Nicoletti, A. Palladini, S. Croci, A. Murgo, A. Antognoli, L. Landuzzi, M. Fabbi, S. Ferrini, P. Musiani, M. Iezzi, C. De Giovanni, P.L. Lollini Cancer Res. 2007 11037 11044

[48] A.U. Neumann Physica A : Statistical Mechanics and Its Applications 1989 1 19

[49] L. Novellino, C. Castelli, G. Parmiani Cancer Immunol Immunother 2005 187 207

[50] M.J. Palmowski, E.M. Choi, I.F. Hermans, S.C. Gilbert, J.L. Chen, U. Gileadi, M. Salio, A. Van Pel, S. Man, E. Bonin, P. Liljestrom, P.R. Dunbar, V. Cerundolo J Immunol 2002 4391 4398

[51] A. Palladini, G. Nicoletti, F. Pappalardo, A. Murgo, V. Grosso, V. Stivani, M.L. Ianzano, A. Antognoli, S. Croci, L. Landuzzi, C. De Giovanni, P. Nanni, S. Motta, P.-L. Lollini Cancer Research 2010 7755 7763

[52] F. Pappalardo, F. Castiglione, P.-L. Lollini, S. Motta Bioinformatics 2005 2891 2897

[53] F. Pappalardo, S. Motta, P.-L. Lollini, E. Mastriani Cellular Immunology 2006 137 140

[54] F. Pappalardo, M.D. Halling-Brown, N. Rapin, P. Zhang Briefings in Bioinformatics 2009 330 340

[55] F. Pappalardo, M. Pennisi, F. Castiglione, S. Motta Biotechnology Advances 2010 82 93

[56] F. 1 Pappalardo, I.M. Forero, M. Pennisi, A. Palazon, I. Melero, S. Motta. SimB16 : modeling the combined anti-tumor effects of anti-CD137 monoclonal antibodies and adoptive T cell therapy against a mouse melanoma model, BMC Cancer, submitted, (2011).

[57] C.R. Parish 2003 106 113

[58] M. Pennisi, F. Pappalardo, A. Palladini, G. Nicoletti, P.Nanni, P.-L. Lollini, S. Motta. Modeling the competition between lung metastases and the immune system using agents, BMC Bioinformatics, 11(Suppl 7) :S13, (2010) doi :10.1186/1471-2105-11-S7-S13.

[59] M. Pennisi, C.Bianca, F. Pappalardo, S. Motta. Modeling artificial immunity against mammary carcinoma, Proceedings of the 10th International Conference on Mathematical Methods in Science and Engineering (CMMSE 2010), ISBN 978- 84-613-5510-5, (2010) 753-756.

[60] M. Pennisi, C. Bianca, F. Pappalardo, S. Motta. Compartmental mathematical modeling of immune system - melanoma competition, Proceedings of the 10th International Conference on Mathematical Methods in Science and Engineering (CMMSE 2011), ISBN 978-84-614-6167-7, (2011) 930-934.

[61] A.S. Perelson, G. Weisbuch Reviews of Moddern Physics 1997 1219 1267

[62] A.M. Smith, A.S. Perelson WIREs Syst Biol Med 2011 429 445

[63] H. Van Poppel, S. Joniau, S.W. Van Gool European Urology 2009 1333 1344

[64] J. Rice, S. Buchan, F. Stevenson J. Immunol 2002 3908 3913

[65] S.A. Rosenberg Nature 2001 380 384

[66] S.A. Rosenberg, J.C. Yang, N.P. Restifo Nat Med 2004 909 915

[67] E. Sercarz, A.H. Coons. The Exhaustion of Specific Antibody Producing Capacity During A Secondary Response, In Mechanisms of Immunological Tolerance Conference. (eds.), Academia Prague, (1962) 78-83.

[68] H.B. Sieburg. A Logical Dynamic Systems Approach to the Regulation of Antigen-Driven Lymphocyte Stimulation, in Theoretical Immunology : Part I. A. S. Perelson (eds.), (1992) 273-293.

[69] D.J. Slamon, W. Godolphin, L.A. Jones, J.A. Holt, S.G. Wong, D.E. Keith, W.J. Levin, S.G. Stuart, J. Udove, A. Ullrich Science 1989 707 712

[70] A.L. Smith, M.E Wikstrom, B. Fazekas De St Groth Immunity 2000 783 794

[71] D. Stauffer, R. Pandey Computers in Physics 1992 404

[72] J. Ŝterzl Cold Spring Harb Symp Quant Biol 1967 493 506

[73] B. Stockinger, T. Barthlott, G. Kassiotis Nat. Immunol 2001 757 758

[74] J. Ursini-Siegel, B. Schade, R.D. Cardiff, W.J. Muller Nat Rev Cancer 2007 389 397

[75] K.E. De Visser, E. Eichten, L.M. Coussens Nature Reviews Cancer 2006 24 37

[76] L.M. Weiner, R. Surana, S. Wang Nature Reviews Immunology 2010 317 327

[77] G. Weisbuch, H. Atlan Journal of Physics A : Mathematical and General 1988 L189 L192

[78] S. Wolfram. Theory and Applications of Cellular Automata, Redwood City, CA : Addison-Wesley (1986).

[79] J.W. Yewdell, J.R. Bennink Annu. Rev. Immunol 1999 51 88

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