Plant Growth and Development - Basic Knowledge and Current Views
Mathematical modelling of natural phenomena, Tome 6 (2011) no. 2, pp. 1-53.

Voir la notice de l'article provenant de la source EDP Sciences

One of the most intriguing questions in life science is how living organisms develop and maintain their predominant form and shape via the cascade of the processes of differentiation starting from the single cell. Mathematical modeling of these developmental processes could be a very important tool to properly describe the complex processes of evolution and geometry of morphogenesis in time and space. Here, we summarize the most important biological knowledge on plant development, exploring the different layers of investigation in developmental processes such as plant morphology, genetics, plant physiology, molecular biology and epigenetics. As knowledge on the fundamentals of plant embryogenesis, growth and development is constantly improving, we gather here the latest data on genetic, molecular and hormonal regulation of plant development together with the basic background knowledge. Special emphasis is placed on the regulation of cell cycle progression, on the role of the signal molecules phytohormones in plant development and on the details of plant meristems (loci containing plant stem cells) function. We also explore several proposed biological models regarding regulating plant development. The information presented here could be used as a basis for mathematical modeling and computer simulation of developmental processes in plants.
DOI : 10.1051/mmnp/20116201

V. Brukhin 1 ; N. Morozova 2

1 IBERS Department, University of Wales, Aberystwyth, United Kingdom
2 1FRE CNRS 3239, Institute André Lwoff, Villejuif, France
@article{MMNP_2011_6_2_a0,
     author = {V. Brukhin and N. Morozova},
     title = {Plant {Growth} and {Development} - {Basic} {Knowledge} and {Current} {Views}},
     journal = {Mathematical modelling of natural phenomena},
     pages = {1--53},
     publisher = {mathdoc},
     volume = {6},
     number = {2},
     year = {2011},
     doi = {10.1051/mmnp/20116201},
     language = {en},
     url = {http://geodesic.mathdoc.fr/articles/10.1051/mmnp/20116201/}
}
TY  - JOUR
AU  - V. Brukhin
AU  - N. Morozova
TI  - Plant Growth and Development - Basic Knowledge and Current Views
JO  - Mathematical modelling of natural phenomena
PY  - 2011
SP  - 1
EP  - 53
VL  - 6
IS  - 2
PB  - mathdoc
UR  - http://geodesic.mathdoc.fr/articles/10.1051/mmnp/20116201/
DO  - 10.1051/mmnp/20116201
LA  - en
ID  - MMNP_2011_6_2_a0
ER  - 
%0 Journal Article
%A V. Brukhin
%A N. Morozova
%T Plant Growth and Development - Basic Knowledge and Current Views
%J Mathematical modelling of natural phenomena
%D 2011
%P 1-53
%V 6
%N 2
%I mathdoc
%U http://geodesic.mathdoc.fr/articles/10.1051/mmnp/20116201/
%R 10.1051/mmnp/20116201
%G en
%F MMNP_2011_6_2_a0
V. Brukhin; N. Morozova. Plant Growth and Development - Basic Knowledge and Current Views. Mathematical modelling of natural phenomena, Tome 6 (2011) no. 2, pp. 1-53. doi : 10.1051/mmnp/20116201. http://geodesic.mathdoc.fr/articles/10.1051/mmnp/20116201/

[1] S.H.Howell. Molecular Genetics of Plant Development. Cambridge University Press, Cambridge, 2000.

[2] B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, P. Walter. Molecular Biology of the Cell (5th ed.). Garland Science, New York, 2008.

[3] TA. Steeves, and IM. Sussex. Patterns in Plant Development. Cambridge University Press, New York, 1989.

[4] M. Aida, T. Ishida, M. Tasaka Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes Development. 1999 1563 1570

[5] M. Aida, T. Vernoux, M. Furutani, J. Traas, M. Tasaka Roles of PIN-FORMED1 and MONOPTEROS in pattern formation of the apical region of the Arabidopsis embryo Development. 2002 3965 3974

[6] M. Aida, M. Tasak Morphogenesis and patterning at the organ boundaries in the higher plant shoot apex Plant Mol. Biol. 2006 915 928

[7] B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, P. Walter. Molecular Biology of the Cell (5th ed.). Garland Science, New York, 2008.

[8] M.J. Aukerman, H. Sakai Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes Plant Cell 2003 2730 2741

[9] D.P. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 2004 281 297

[10] M.K. Barton, R.S. Poethig Formation of the shoot apical meristem in Arabidopsis thaliana - an analysis of development in the wild type and in the shoot meristemless mutant Development 1993 823 831

[11] T.B. Batygina. Embryoidogeny. In: T.B. Batygina [ed.], Embryology of flowering plants. Terminology and concepts.vol.2, 502-509. Science Publishers, Inc., Enfield (NH), Plymouth, 2006.

[12] T.B. Batygina, V.E. Vasileva. Plant reproduction. Sankt-Petersburg University Press, Sankt-Petersburg, 2002. (In Russian).

[13] E. Benkova, M. Michniewicz, M. Sauer, T. Teichmann, D. Seifertova, G. Jürgens, J. Friml Local, efflux-dependent auxin gradients as a common module for plant organ formation Cell 2003 591 602

[14] M.J. Bennett, A. Marchant, H.G. Green, S.T. May, S.P. Ward, P.A. Millner, A.R. Walker, B. Schulz, K.A. Feldmann Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism Science 1996 948 950

[15] T. Berleth, G. Jurgens The role of monopteros gene in organizing the basal body regionof the Arabidopsis embryo Development 1993 575 587

[16] N. Bessonov, N. Morozova, V. Volpert Modeling of branching patterns in plants Bull Math Biol. 2008 868 89

[17] I. Blilou, J. Xu, M. Wildwater, V. Willemsen, I. Paponov, J. Friml, R. Heidstra, M. Aida, K. K. Palme, B. Scheres The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots Nature 2005 39 44

[18] W. Bloom Cellular differentiation and tissue culture Physiol. Rev. 1937 589 617

[19] N.H. Boke Leaf and areole development in Coryphantha Am. J. Bot. 1952 134 145

[20] L. Borisjuk, H. Rolletschek, U. Wobus, H. Weber Differentiation of legume cotyledons as related to metabolic gradients and assimilate transport into seeds J. Exp. Biol. 2003 503 512

[21] E. Boucheron, A. Guivarc’H, A. Azmi, W. Dewitte, H. Van Onckelen, D. Chriqui Competency of Nicotiana tabacum L. stem tissues to dedifferentiate is associated with differential levels of cell cycle gene expression and endogenous cytokinins Planta 2002 267 278

[22] J.L. Bowman, D.R. Smyth, E.M. Meyerowitz Genetic interactions among floral homeotic genes of Arabidopsis Development 1991 1 20

[23] U. Brand, J.C. Fletcher, M. Hobe, E.M. Meyerowitz, R. Simon Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity Science 2000 617 619

[24] V.B. Brukhin. Paeonia embryo development in vivo and in vitro. PhD thesis, Komarov Botanical Institute, Russian Academy of Sciences, St.Petersburg, 1993.

[25] V.B. Brukhin, T.B. Batygina Embryo culture and somatic embryogenesis in culture of Paeonia anomala L Phytomorphology 1994 151 157

[26] M.E. Byrne, C.A. Kidner, R.A. Martienssen Plant stem cells: divergent pathways and common themes in shoots and roots Current Opinion in Genetics and Development 2003 551 557

[27] I. Casimiro, A. Marchant, R.P. Bhalerao, T. Beeckman, S. Dhooge, R. Swarup, N. Graham, D. Inze, G. Sandberg, P.J. Casero, M. Bennett Auxin transport promotes Arabidopsis lateral root initiation Plant Cell 2001 843 852

[28] A.M. Chaudhury, L. Ming, C. Miller, S. Craig, E.S. Dennis, W.J. Peacock Fertilisation-independent seed development in Arabidopsis thaliana Proc Natl Acad Sci USA 1997 4223 4228

[29] S.E. Clark, R.W. Williams, E.M. Meyerowitz The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis Cell 1997 575 585

[30] F.A. Clowes. Apical Meristems. Davis Company, Philadelphia, 1961.

[31] Jm. Cock, S. Mccormick A Large Family of Genes That Share Homology with CLAVATA3 Plant Physiology 2001 939 942

[32] D.J. Cosgrove Loosening of plant cell walls by expansins Nature 2000 321 326

[33] A. Delisle The influence of auxin on secondary branching in two species of aster Am. J. Bot. 1937 159 167

[34] P. Dhonukshe, H. Tanaka, T. Goh, K. Ebine, Ap. M?H?Nen, K. Prasad, I. Blilou, I.N. Geldner, J. Xu, T. Uemura, J. Chory, T. Ueda, A. Nakano, B. Scheres, J. Friml Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions Nature 2008 962 966

[35] S.J. Elledge Cell Cycle Checkpoints: Preventing an Identity Crisis Science 1996 1664 1672

[36] K. Endrizzi, B. Moussian, A. Haecker, Jz. Levin, T. Laux The SHOOT MERISTEMLESS gene is required for maintenance of undifferentiated cells in Arabidopsis shoot and floral meristems and acts at a different regulatory level than the meristem genes WUSCHEL and ZWILLE Plant J. 1996 967 979

[37] G.I. Evan, K.H. Vousden Proliferation, cell cycle and apoptosis in cancer Nature 2001 342 348

[38] A.J. Fleming, Mcqueen-Mason, T. Mandel, C. Kuhlemeier Induction of leaf primordia by the cell wall protein expansion Science 1997 1415 1418

[39] A.J. Fleming Formation of primordia and phyllotaxy Curr. Opin. Plant Biol. 2005 53 58

[40] J.C. Fletcher, U. Brand, M.P. Running, R. Simon, E.M. Meyerowitz Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems Science 1999 1911 1914

[41] J.C. Fletcher Shoot and Floral Meristem Maintenance in Arabidopsis Annu. Rev. Plant Biol. 2002 45 66

[42] J. Friml, E. Benkova, I. Blilou, J. Wisniewska, T. Hamann, K. Ljung, S. Woody, G. Sandberg, B. Scheres, G. Jurgens, K. Palme AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis Cell 2002 661 673

[43] J. Friml, A. Vieten, M. Sauer, D. Weijers, H. Schwarz, T. Hamann, R. Offringa, G. Jurgens Effluxdependent auxin gradients establish the apical-basal axis of Arabidopsis Nature 2003 147 153

[44] L. Galweiler, C. Guan, A. Muller, E. Wisman, K. Mendgen, A. Yephremov, K. Palme Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue Science 1998 2226 2230

[45] N. Geldner, J. Friml, Y.D. Stierhof, G. Jurgens, K. Palme Auxin transport inhibitors block PIN1 cycling and vesicle trafficking Nature 2001 425 428

[46] N. Geldner, N. Anders, H. Wolters, J. Keicher, W. Kornberger, P. Muller, A. Delbarre, T. Ueda, A. Nakano, G. Jürgens The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth Cell 2003 219 230

[47] N. Geldner, S. Richter, A. Vieten, S. Marquardt, R.A. Torres-Ruiz, U. Mayer, G. Jürgens Partial loss-of-function alleles reveal a role for GNOM in auxin transport-related, post-embryonic development of Arabidopsis Development 2004 389 400

[48] G. Grafi How cells dedifferentiate: a lesson from plants Dev Biol. 2004 1 6

[49] T. Greb, O. Clarenz, E. Schafer, D. Muller, R. Herrero, G. Schmitz, K. There Molecular analysis of the LATERAL SUPPRESSOR gene in Arabidopsis reveals a conserved control mechanism for axillary meristem formation Genes Dev. 2003 1175 1187

[50] U. Grossniklaus, J.P. Vielle-Calzada, M.A. Hoeppner, W.B. Gagliano Maternal control of embryogenesis by MEDEA, a Polycomb-group gene in Arabidopsis Science 1998 446 450

[51] M.G. Heisler, C. Ohno, P. Das, P. Sieber, G.V. Reddy, J.A. Long, E.M. Meyerowitz Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem Curr. Biol. 2005 1899 1911

[52] T. Hamann, E. Benkova, I. Baurle, M. Kientz, G. Jurgens The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning Genes Dev. 2002 1610 1615

[53] T. Hamann, U. Mayer, G. Jurgens The auxin-insensitive bodenlos mutation affects primary root formation and apical-basal patterning in the Arabidopsis embryo Development 1999 1387 1395

[54] D. Hanahan, Ra. Weinberg The hallmarks of cancer Cell 2000 57 70

[55] C.S. Hardtke, T. Berleth The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development EMBO J. 1998 1405 1411

[56] Y. Helariutta, H. Fukaki, J. Wysocka-Diller, K. Nakajima, J. Jung, G. Sena, M.T. Hauser, P.N. Benfey The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling Cell 2000 555 567

[57] S. Herwig, M. Strauss The retinoblastoma protein: a master regulator of cell cycle, differentiation and apoptosis Eur J Biochem. 1997 581 601

[58] S.H. Howell. Molecular Genetics of Plant Development. Cambridge University Press, Cambridge, 2000.

[59] K. Himanen, E. Boucheron, S. Vanneste, J. De Almeida Engler, D. Inze, T. Beeckman Auxinmediated cell cycle activation during early lateral root initiation Plant Cell 2002 2339 2351

[60] D. Jackson, B. Veit, S. Hake Expression of maize KNOTTED1 related homeobox genes in the shoot apical meristem predicts patterns of morphogenesis in the vegetative shoot Development 1994 405 413

[61] R.V. Jean. Phyllotaxis. A Systematic Study in Plant Morphogenesis. Cambridge University Press, New York, 1994.

[62] S. Jeong, A.E. Trotochaud, S.E. Clark The Arabidopsis CLAVATA2 gene encodes a receptor-like protein required for the stability of the CLAVATA1 receptor-like kinase Plant Cell 1999 1925 1934

[63] K. Jiang, Y.L. Meng, L.J. Feldman Quiescent center formation inmaize roots is associated with an auxin-regulated oxidizing environment Development 2003 1429 1438

[64] V.. Jimenez Regulation of in vitro somatic embryogenesis with emphasis on to the role of endogenous hormones Rev Brasil de Fisio Vegl. 2001 196 22

[65] H. Jonsson, M.G. Heisler, B.E. Shapiro, E.M. Meyerowitz, E. Mjolsness An auxin-driven polarized transport model for phyllotaxis Proc. Natl. Acad. Sci. USA 2006 1633 1638

[66] G. Jurgens, U. Mayer, R.A.T. Ruiz, T. Berleth, S. Misera Genetic analysis of pattern formation in the Arabidopsis embryo Development Suppl. 1991 27 3

[67] G. Jurgens, N. Geldner Protein secretion in plants: from the trans-Golgi network to the outer space Traffic 2002 605 613

[68] H. Ishikawa, M.L. Evans Specialized zones of development in roots Plant Physiol. 1995 725 727

[69] N.M. Kerk, K. Jiang, L.J. Feldman Auxin metabolism in the root apical meristem Plant Physiol. 2000 925 932

[70] R.A. Kerstetter, S. Hake Shoot Meristem Formation in Vegetative Development Plant Cell. 1997 1001 1010

[71] A.M. Koltunow Apomixis: embryo sacs and embryos formed without meiosis or fertilization in Ovules Plant Cell 1993 1425 1437

[72] P. Laufs, A. Peaucelle, H. Morin, J. Traas MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems Development 2004 4311 4322

[73] T. Laux, Kfx. Mayer, J. Berger, G. Jurgens The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis Development 1996 87 96

[74] J. Law, S. Jacobsen Establishing, maintaining and modifying DNA methylation patterns in plants and animals Nature Reviews Genetics 2010 204 220

[75] M. Lenhard, T. Laux Stem cell homeostasis in the Arabidopsis shoot meristem is regulated by intercellular movement of CLAVATA3 and its sequestration by CLAVATA1 Development 2003 3163 3173

[76] P. Leon, J. Sheen Sugar and hormone connections Trends Plant Sci. 2003 110 116

[77] C. Lincoln, J. Long, J. Yamaguchi, K. Serikawa, S. Hake A knotted1-like Homeobox Gene in Arabidopsis Is Expressed in the Vegetative Meristem and Dramatically Alters Leaf Morphology When Overexpressed in Transgenic Plants Plant Cell 1994 1859 1876

[78] Y. Liu, M.S. Rao Transdifferentiation-fact or artifact J. Cell. Biochem. 2003 29 40

[79] K. Ljung, Ak. Hull, J. Celenza, M. Yamada, M. Estelle, J. Normanly, G. Sandberg Sites and regulation of auxin biosynthesis in Arabidopsis roots Plant Cell 2005 1090 104

[80] J.A. Long, E.I. Moan, J.I. Medford, M.K. Barton A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis Nature 1996 66 69

[81] J.U. Lohmann, R.L. Hong, M. Hobe, M.A. Busch, F. Parcy, R. Simon, D. Weigel A Molecular Link between Stem Cell Regulation and Floral Patterning in Arabidopsis Cell 2001 793 803

[82] J. Lopez-Bucio, E. Hernandez-Abreu, L. Sanchez-Calderon, Mf. Nieto-Jacobo, J. Simpson, L. Herrera-Estrella. Phosphate availability alters architecture and causes changes in hormone sensitivity in the Arabidopsis root system Plant Physiol. 2002 244 256

[83] S. Lorenz, S. Tintelnot, R. Reski, E.L. Decker Cyclin D-knockout uncouples developmental progression from sugar availability Plant Mol. Biol. 2003 227 236

[84] P. Lu, R. Porat, J.A. Nadeau, S.D. O’Neill Identification of a meristem L1 layer-specific gene in Arabidopsis that is expressed during embryonic pattern formation and defines a new class of homebox genes Plant Cell 1996 2155 2168

[85] J. Luck and H. Luck. Classification of Plant Meristems based on Cellworks (3D L-systems). The Maintainance and Comlexity of Their Cellular Patterns. In: Pattern Formation in Biology, Vision and Dynamics. Editors: A. Carbone, M. Gromov, P. Prusinkiewicz. 2000, 199-216.

[86] W. Lukowitz, U. Mayer, G. Jürgens Cytokinesis in the Arabidopsis embryo involves the syntaxin-related KNOLLE gene product Cell 1996 61 71

[87] R.F. Lyndon. The Shoot Apical Meristem. Cambridge University Press, Cambridge. 1998.

[88] K. Lynn, A. Fernandez, M. Aida, J. Sedbrook, M. Tasaka, P. Masson, Mk. Barton The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene Development 1999 469 481

[89] Z. Magyar, L. De Veylder, A. Atanassova, L. Bako, D. Inze, L. Bogre The role of the Arabidopsis E2FB transcription factor in regulating auxin-dependent cell division Plant Cell 2005 2527 2541

[90] U. Mayer, G. Buettner, G. Jürgens Apical-basal pattern formation in the Arabidopsis embryo studies on the role of the gnom gene Development 1993 149 162

[91] K.F. Mayer, H. Schoof, A. Haecker, M. Lenhard, G. Jürgens, T. Laux Role of WUSCHEL in Regulating Stem Cell Fate in the Arabidopsis Shoot Meristem Cell 1998 805 815

[92] R.D. Meicenheimer Changes in Epilobium phyllotaxy induced by N-1-naphthylphthalamic acid and a-4-chlorophenoxyisobutyric acid Am. J. Bot. 1981 1139 1154

[93] Y. Mizukami, H. Ma Determination of Arabidopsis Floral Meristem identity by Agamous The Plant Cell 1997 393 408

[94] A.P. Mordhorst, K.J. Voerman, M.V. Hartog, E.A. Meijer, J. Van Went, M. Koornneef, S.C. De Vries Somatic embryogenesis in Arabidopsis thaliana is facilitated by mutations in genes repressing meristematic cell divisions Genetics 1998 549 563

[95] J.B. Morel, C. Godon, P. Mourrain, C. Beclin, S. Boutet, F. Feuerbach, F. Proux, H. Vaucheret Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance Plant Cell 2002 629 639

[96] J. Mravec, M. Kubes, A. Bielach, V. Gaykova, J. Petr?Sek, P. Skupa, S. Chand, E. Benkov, E. Zaz?Malov, J. Friml Interaction of PIN and PGP transport mechanisms in auxin distribution-dependent development Development 2008 3345 3354

[97] A. Muller, C. Guan, L. Gälweiler, P. Tänzler, P. Huijser, A. Marchant, G. Parry, M. Bennett, E. Wisman, K. Palme AtPIN2 defines a locus of Arabidopsis for root gravitropism control EMBO J. 1998 6903 6911

[98] K. Nakajima, G. Sena, T. Naw, Pn. Benfey Intercellular movement of the putative transcription factor SHR in root patterning Nature 2001 307 311

[99] D.M. Nelson, X. Ye, C. Hall, H. Santos, T. Ma, Gd. Kao, Tj. Yen, J.W. Harper, P.D. Adams Coupling of DNA synthesis and histone synthesis in S phase independent of cyclin/cdk2 activity Mol. Cell. Biol. 2002 7459 7472

[100] E.A. Nigg Cyclin-dependent protein kinases: key regulators of the eukaryotic cell cycle Bioessays 1995 471 480

[101] S.J. Odelberg Inducing cellular dedifferentiation: a potential method for enhancing endogenous regeneration in mammals Semin. Cell Dev. Biol. 2002 335 343

[102] K. Okada, J. Ueda, M.K. Komaki, C.J. Bell, Y. Shimura Requirement of the auxin polar transport system in early stages of arabidopsis floral bud formation Plant Cell 1991 677 684

[103] D.J. Osborne, MT. McManus. Hormones, Signals and Target Cells in Plant Development. Cambridge University Press, Cambridge, 2005.

[104] J.F. Palatnik, E. Allen, X. Wu, C. Schommer, R. Schwab, J.C. Carrington, D. Weigel Control of leaf morphogenesis by microRNAs Nature 2003 257 263

[105] S. Pien, J. Wyrzykowska, S. Mcqueen-Mason, C. Smart, A. Fleming Local expression of expansion induces the entire process of leaf development and modifies leaf shape Proc. Natl. Acad. Sci.USA 2001 11812 11817

[106] R.S. Poethig, E.H.J. Coe, Mm. Johri Cell linage patterns in maize Zea mays embryogenesis a clonal analysis Dev. Biol. 1986 392 404

[107] M.S. Rajeevan, A. Lang Flower-bud formation in explants of photoperiodic and day-neutral Nicotiana biotypes and its bearing on the regulation of flower formation Proc. Natl. Acad. Sci. USA 1993 4636 4640

[108] D. Reinhardt Regulation of phyllotaxis Int. J. Dev. Biol. 2005 539 546

[109] D. Reinhardt, F. Wittwer, T. Mandel, C. Kuhlemeier Localized upregulation of a new expansion gene predicts the site of leaf formation in the tomato meristem Plant Cell 1998 1427 1437

[110] D. Reinhardt, T. Mandel, C. Kuhlemeier Auxin regulates the initiation and radial position of plant lateral organs Plant Cell 2000 507 518

[111] D. Reinhardt, E.R. Pesce, P. Stieger, T. Mandel, K. Baltensperger, M. Bennett, J. Traas, J. Friml, C. Kuhlemeier Regulation of phyllotaxis by polar auxin transport Nature 2003 255 260

[112] P.B. De Reuille, I. Bohn-Courseau, C. Godin, J. Traas A protocol to analyse cellular dynamics during plant development Plant J. 2005 1045 1053

[113] M.W. Rhoades, B.J. Reinhart, L.P. Lim, C.B. Burge, B. Bartel, Dp. Bartel Prediction of plant microRNA targets Cell 2002 513 520

[114] E. Rojo, V.K. Sharma, V. Kovaleva, N.V. Raikhel, J.C. Fletcher CLV3 is localized to the extracellular space, where it activates the Arabidopsis CLAVATA stem cell signaling pathway Plant Cell 2002 969 977

[115] E. Rosche, D. Blackmore, M. Tegeder, T. Richardson, H. Schroeder, T.J. Higgins, W.B. Frommer, C.E. Offler, J.W. Patrick Seed-specific overexpression of a potato sucrose transporter increases sucrose uptake and growth rates of developing pea cotyledons Plant J. 2002 165 175

[116] S. Sabatini, D. Beis, H. Wolkenfelt, J. Murfett, T. Guilfoyle, J. Malamy, P. Benfey, O. Leyser, N. Bechtold, P. Weisbeek, B. Scheres An auxindependent distal organizer of pattern and polarity in the Arabidopsis root Cell 1999 463 472

[117] S. Sabatini, R. Heidstra, M. Wildwater, B. Scheres SCARECROW is involved in positioning the stem cell niche in the Arabidopsis root meristem Genes Dev. 2003 354 358

[118] B. Scheres, H. Wolkenfelt, V. Willemsen, M. Terlouw, E. Lawson, C. Dean, P. Weisbeek Embryonic origin of the Arabidopsis primary root and root meristem initials Development 1994 2475 2487

[119] G. Schindelman, A. Morikami, J. Jung, Ti. Baskin, Nc. Carpita, P. Derbyshire, Mc. Mccann, Pn. Benfey COBRA encodes a putative GPI-anchored protein, which is polarly localized and necessary for oriented cell expansion in Arabidopsis Genes Dev. 2001 1115 1127

[120] H. Schoof, M. Lenhard, A. Haecker, K.F. Mayer, G. Jurgens, T. Laux The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes Cell 2000 635 644

[121] C.J. Sherr Cancer cell cycles Science 1996 1672 1677

[122] F. Sitbon, C. Astot, A. Edlund, A. Crozier, G. Sandberg The relative importance of tryptophan-dependent and tryptophan-independent biosynthesis of indole-3-acetic acid in tobacco during vegetative growth Planta 2000 715 721

[123] F. Skoog. Chemical regulation of growth in plants. In: E.J. Boell (Ed.), Dynamics of Growth Process. 1954, 148-182.

[124] F. Skoog, C.O. Miller Chemical regulation of growth and organ formation in plant tissues cultured in vitro Symp. Soc. Exp. Biol. 1957 118 140

[125] R.S. Smith, S. Guyomarch, T. Mandel, D. Reinhardt, C. Kuhlemeier, P. Prusinkiewicz A plausible model of phyllotaxis Proc. Natl. Acad. Sci. USA 2006 1301 1306

[126] R. Soni, J.P. Carmichael, Z.H. Shah, J.A. Murray A family of cyclin D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif Plant Cell 1995 85 103

[127] E. Souer, A. Van Houwelingen, D. Kloos, J. Mol, R. Koes The NO APICAL MERISTEM gene of petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries Cell 1996 159 170

[128] T.A. Steeves and I.M. Sussex. Patterns in Plant Development, Cambridge University Press, New York, 1989.

[129] T. Steinmann, N. Geldner, M. Grebe, S. Mangold, C.L. Jackson, S. Paris, L. G?Lweiler, K. Palme, G. Jurgens Coordinated polar localization of auxin efflux carrier PIN1 by GNOM ARF GEF Science 1999 316 318

[130] P.A. Stieger, D. Reinhardt, C. Kuhlemeier The auxin influx carrier is essential for correct leaf positioning Plant J. 2002 509 517

[131] P. Stirnberg, S.P. Chatfield, Hm. Leyser AXR1 acts after lateral bud formation to inhibit lateral bud growth in Arabidopsis Plant Physiol. 1999 839 847

[132] J.M. Stone, A.E. Trotochaud, J.C. Walker, S.E. Clark Control of meristem development by CLAVATA1 receptor kinase and kinase-associated protein phosphatase interactions Plant Physiol. 1998 1217 1225

[133] R. Swarup, J. Friml, A. Marchant, K. Ljung, G. Sandberg, K. Palme, M. Bennett Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex Genes Dev. 2001 2648 2653

[134] G. Tang siRNA and miRNA: an insight into RISCs Trends in Biochemical Sciences 2005 106 114

[135] R.L. Taylor The foliar embryos of Malaxias paludosa Canad. J. Bot. 1967 1553 1556

[136] W.L. Teo, P. Kumar, C.J. Goh, S. Swarup The expression of Brostm, a KNOTTED1-like gene, marks the cell type and timing of in vitro shoot induction in Brassica oleracea Plant Mol. Biol. 2001 567 580

[137] K.V. Thimann, F. Skoog Studies on the Growth Hormone of Plants: III. The Inhibiting Action of the Growth Substance on Bud Development Proc. Natl. Acad. Sci. USA 1933 714 716

[138] E. Thingnaes, S. Torre, A. Ernstsen, R. Moe Day and night temperature responses in Arabidopsis:effects on gibberellin and auxin content, cell size, morphology and flowering time Ann. Bot.(Lond.) 2003 601 612

[139] R.A. Torres-Ruitz, A. Lohner, G. Jurgens The GURKE gene gene is required for normal organization of the apical region in the Arabidopsis embryo Plant J. 1996 1005 1016

[140] D. Tosh, J.M. Slack How cells change their phenotype Nat. Rev. Mol. Cell Biol. 2002 187 194

[141] J. Traas, I. Bohn-Courseau Cell proliferation patterns at the shoot apical meristem Curr. Opin. Plant Biol. 2005 587 592

[142] B.S. Treml, S. Winderl, R. Radykewicz, M. Herz, G. Schweizer, P. Hutzler, E. Glawischnig, R.A. Ruiz The gene ENHANCER OF PINOID controls cotyledon development in the Arabidopsis embryo Development 2005 4063 4074

[143] T. Vernoux, J. Kronenberger, O. Grandjean, P. Laufs, J. Traas PIN-FORMED 1 regulates cell fate at the periphery of the shoot apical meristem Development 2000 5157 5165

[144] C.W. Vroemen, A.P. Mordhorst, C. Albrecht, M.A. Kwaaitaal, Sc. De Vries The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis Plant Cell 2003 1563 1577

[145] Y. Wang, C. Liu, K Li, F. Sun, H. Hu, X. Li, Y. Zhao, C. Han, W. Zhang, Y. Duan, M. Liu Arabidopsis EIN2 modulates stress response through abscisic acid response pathway Plant Mol. Biol. 2007 633 644

[146] F.M. Watt, B.L. Hogan Out of Eden: stem cells and their niches Science 2000 1427 1430

[147] D. Weigel, G. Jürgens Stem cells that make stems Nature 2002 751 754

[148] F.W. Went Plant growth under controlled conditions. III. Correlation between various physiological processes and growth in the tomato plant Am. J. Bot. 1944 597 618

[149] A.D. Whetton, G.J. Graham Homing and mobilization in the stem cell niche Trends Cell Biol. 1999 233 238

[150] I. Wilmut, N. Beaujean, P.A. De Sousa, A. Dinnyes, T.J. King, L.A. Paterson, D.N. Wells, L.E. Young Somatic cell nuclear transfer Nature 2002 583 586

[151] R.W. Williams, J.M. Wilson, E.M. Meyerowitz A possible role for kinase-associated protein phosphatase in the Arabidopsis CLAVATA1 signaling pathway Proc. Natl. Acad. Sci. USA 1997 10467 10472

[152] J. Wyrzykowska, S. Pien, W.H. Shen, Aj. Fleming Manipulation of leaf shape by modulation of cell division Development 2002 957 964

[153] J.W. Wysocka-Diller, Y. Helariutta, H. Fukaki, J.E. Malamy, P.N. Benfey Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot Development 2000 595 603

[154] M. Yamaguchi, H. Kato, S. Yoshida, S. Yamamura, H. Uchimiya, M. Umeda Control of in vitro organogenesis by cyclin-dependent kinase activities in plants Proc. Natl. Acad. Sci. USA 2003 8019 8023

[155] J.A. Yarbrough Anatomical and developmental studies of the foliar embryos of Bryophyllum calicinum Amer. J. of Bot. 1932 443 453

[156] Y.X. Zhu, P.J. Davies The control of apical bud growth and senescence by auxin and gibberellin in genetic lines of peas Plant Physiol. 1997 631 637

Cité par Sources :